Faber, K. et al.: 2015 Science of Synthesis: Biocatalysis in Organic Synthesis 3 DOI: 10.1055/sos-SD-216-00397
Biocatalysis in Organic Synthesis 3

3.11 Creation and Optimization of Artificial Enzymes for Abiological Reactions

More Information

Book

Editors: Faber, K.; Fessner, W.-D.; Turner, N. J.

Authors: Allen, C. C. R.; de Gonzalo, G.; Ellinger, J. J.; Ewing, T. A.; Faber, K.; Fernández-Lucas, J.; Flynn, C. M.; Fraaije, M. W.; García-Junceda, E.; Garrabou, X.; Gkotsi, D. S.; Glueck, S. M.; Goss, R. J. M.; Grogan, G.; Gröger, H.; Grüschow, S.; Hammer, S. C.; Hauer, B.; Herter, S.; Hilvert, D.; Hollmann, F.; Hormigo, D.; Hummel, W.; Molla, G.; Nestl, B. M.; Nolte, J. C.; Obexer, R.; Oroz-Guinea, I.; Patel, R. N.; Pollegioni, L.; Quin, M. B.; Schmidt-Dannert, C.; Smith, D. R. M.; Turner, N. J.; Urlacher, V. B.; van Berkel, W. J. H.; Woodley, J. M.

Title: Biocatalysis in Organic Synthesis 3

Print ISBN: 9783131746610; Online ISBN: 9783131974914; Book DOI: 10.1055/b-003-125814

Subjects: Organic Chemistry

Science of Synthesis Reference Libraries



Parent publication

Title: Science of Synthesis

DOI: 10.1055/b-00000101

Type: Multivolume Edition

 


Abstract

Catalytic antibody technology and computational design represent conceptually distinct strategies to artificial enzymes. Both approaches provide significant activities and tailored specificities for mechanistically distinct transformations, including abiological and asymmetric reactions. This review compares the relative strengths and limitations of such de novo catalysts, delineating challenges to overcome in the pursuit of synthetically useful enzymes for any given chemical transformation.

 
  • 2 Bornscheuer UT, Huisman GW, Kazlauskas RJ, Lutz S, Moore JC, Robins K. Nature (London) 2012; 485: 185
  • 8 Hershfield MS, Buckley RH, Greenberg ML, Melton AL, Schiff R, Hatem C, Kurtzberg J, Markert ML, Kobayashi RH, Kobayashi AL, Abuchowski A. N. Engl. J. Med. 1987; 316: 589
  • 17 Savile CK, Janey JM, Mundorff EC, Moore JC, Tam S, Jarvis WR, Colbeck JC, Krebber A, Fleitz FJ, Brands J, Devine PN, Huisman GW, Hughes GJ. Science (Washington, D. C.) 2010; 329: 305
  • 38 Kiss G, Çelebi-Ölçüm N, Moretti R, Baker D, Houk KN. Angew. Chem. 2013; 125: 5810 Angew. Chem. Int. Ed. 2013; 52: 5700
  • 41 Zanghellini A, Jiang L, Wollacott AM, Cheng G, Meiler J, Althoff EA, Röthlisberger D, Baker D. Protein Sci. 2006; 15: 2785
  • 48 Katayama K, Kobayashi T, Oikawa H, Honma M, Ichihara A. Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol. 1998; 1384: 387
  • 49 Auclair K, Sutherland A, Kennedy J, Witter DJ, Van den Heever JP, Hutchinson CR, Vederas JC. J. Am. Chem. Soc. 2000; 122: 11519
  • 59 Siegel JB, Zanghellini A, Lovick HM, Kiss G, Lambert AR, St.Clair JL, Gallaher JL, Hilvert D, Gelb MH, Stoddard BL, Houk KN, Michael FE, Baker D. Science (Washington, D. C.) 2010; 329: 309
  • 60 Yli-Kauhaluoma JT, Ashley JA, Lo C.-H, Tucker L, Wolfe MM, Janda KD. J. Am. Chem. Soc. 1995; 117: 7041
  • 61 Eiben CB, Siegel JB, Bale JB, Cooper S, Khatib F, Shen BW, Players F, Stoddard BL, Popovic Z, Baker D. Nature Biotechnol. 2012; 30: 190
  • 62 Preiswerk N, Beck T, Schulz JD, Milovnik P, Mayer C, Siegel JB, Baker D, Hilvert D. Proc. Natl. Acad. Sci. U. S. A. 2014; 111: 8013
  • 65 Kündig EP, Saudan CM, Bernardinelli G. Angew. Chem. 1999; 111: 1297 Angew. Chem. Int. Ed. 1999; 38: 1220
  • 74 Moroz OV, Moroz YS, Wu Y, Olsen AB, Cheng H, Mack KL, McLaughlin JM, Raymond EA, Zhezherya K, Roder H, Korendovych IV. Angew. Chem. 2013; 125: 6366 Angew. Chem. Int. Ed. 2013; 52: 6246
  • 75 Röthlisberger D, Khersonsky O, Wollacott AM, Jiang L, DeChancie J, Betker J, Gallaher JL, Althoff EA, Zanghellini A, Dym O, Albeck S, Houk KN, Tawfik DS, Baker D. Nature (London) 2008; 453: 190
  • 77 Khersonsky O, Röthlisberger D, Wollacott AM, Murphy P, Dym O, Albeck S, Kiss G, Houk KN, Baker D, Tawfik DS. J. Mol. Biol. 2011; 407: 391
  • 78 Khersonsky O, Kiss G, Röthlisberger D, Dym O, Albeck S, Houk KN, Baker D, Tawfik DS. Proc. Natl. Acad. Sci. U. S. A. 2012; 109: 10358
  • 79 Privett HK, Kiss G, Lee TM, Blomberg R, Chica RA, Thomas LM, Hilvert D, Houk KN, Mayo SL. Proc. Natl. Acad. Sci. U. S. A. 2012; 109: 3790
  • 80 Blomberg R, Kries H, Pinkas DM, Mittl PRE, Grütter MG, Privett HK, Mayo SL, Hilvert D. Nature (London) 2013; 503: 418
  • 82 Müller MM, Windsor MA, Pomerantz WC, Gellman SH, Hilvert D. Angew. Chem. 2009; 121: 940 Angew. Chem. Int. Ed. 2009; 48: 922
  • 87 Barbas III CF, Heine A, Zhong G, Hoffmann T, Gramatikova S, Björnestedt R, List B, Anderson J, Stura EA, Wilson IA, Lerner RA. Science (Washington, D. C.) 1997; 278: 2085
  • 89 Hoffmann T, Zhong G, List B, Shabat D, Anderson J, Gramatikova S, Lerner RA, Barbas III CF. J. Am. Chem. Soc. 1998; 120: 2768
  • 94 Jiang L, Althoff EA, Clemente FR, Doyle L, Röthlisberger D, Zanghellini A, Gallaher JL, Betker JL, Tanaka F, Barbas III CF, Hilvert D, Houk KN, Stoddard BL, Baker D. Science (Washington, D. C.) 2008; 319: 1387
  • 95 Althoff EA, Wang L, Jiang L, Giger L, Lassila JK, Wang Z, Smith M, Hari S, Kast P, Herschlag D, Hilvert D, Baker D. Protein Sci. 2012; 21: 717
  • 98 Wang L, Althoff EA, Bolduc J, Jiang L, Moody J, Lassila JK, Giger L, Hilvert D, Stoddard B, Baker D. J. Mol. Biol. 2012; 415: 615
  • 99 Obexer R, Studer S, Giger L, Pinkas DM, Grütter MG, Baker D, Hilvert D. ChemCatChem 2014; 6: 1043
  • 100 Bjelic S, Kipnis Y, Wang L, Pianowski Z, Vorobiev S, Su M, Seetharaman J, Xiao R, Kornhaber G, Hunt JF, Tong L, Hilvert D, Baker D. J. Mol. Biol. 2014; 426: 256
  • 110 Richter F, Blomberg R, Khare SD, Kiss G, Kuzin AP, Smith AJT, Gallaher J, Pianowski Z, Helgeson RC, Grjasnow A, Xiao R, Seetharaman J, Su M, Vorobiev S, Lew S, Forouhar F, Kornhaber GJ, Hunt JF, Montelione GT, Tong L, Houk KN, Hilvert D, Baker D. J. Am. Chem. Soc. 2012; 134: 16197
  • 112 Gordon SR, Stanley EJ, Wolf S, Toland A, Wu SJ, Hadidi D, Mills JH, Baker D, Pultz IS, Siegel JB. J. Am. Chem. Soc. 2012; 134: 20513
  • 119 Khare SD, Kipnis Y, Greisen PJ, Takeuchi R, Ashani Y, Goldsmith M, Song Y, Gallaher JL, Silman I, Leader H, Sussman JL, Stoddard BL, Tawfik DS, Baker D. Nature Chem. Biol. 2012; 8: 294
  • 129 Mills JH, Khare SD, Bolduc JM, Forouhar F, Mulligan VK, Lew S, Seetharaman J, Tong L, Stoddard BL, Baker D. J. Am. Chem. Soc. 2013; 135: 13393