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DOI: 10.1055/a-2462-2351
FHIR – Overdue Standard for Radiology Data Warehouses
Article in several languages: English | deutsch Supported by: Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) 499552394 – SFB 1597Supported by: Medizinische Fakultät der Albert-Ludwigs-Universität Freiburg Hans A. Krebs Medical Scientist Program
Abstract
Background
In radiology, technological progress has led to an enormous increase in data volumes. To effectively use these data during diagnostics or subsequent clinical evaluations, they have to be aggregated at a central location and be meaningfully retrievable in context. Radiology data warehouses undertake this task: they integrate diverse data sources, enable patient-specific and examination-specific evaluations, and thus offer numerous benefits in patient care, education, and clinical research.
Method
The international standard Health Level 7 (HL7) Fast Healthcare Interoperability Resources (FHIR) is particularly suitable for the implementation of such a data warehouse. FHIR allows for easy and fast data access, supports modern web-based frontends, and offers high interoperability due to the integration of medical ontologies such as SNOMED-CT or RadLex. Furthermore, FHIR has a robust data security concept. Because of these properties, FHIR has been selected by the Medical Informatics Initiative (MII) as the data standard for the core data set and is intended to be promoted as an international standard in the European Health Data Space (EHDS).
Conclusion
Implementing the FHIR standard in radiology data warehouses is therefore a logical and sensible step towards data-driven medicine.
Key Points
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A data warehouse is essential for data-driven medicine, clinical care, and research purposes.
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Data warehouses enable efficient integration of AI results and structured report templates.
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Fast Healthcare Interoperability Resources (FHIR) is a suitable standard for a data warehouse.
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FHIR provides an interoperable data standard, supported by proven web technologies.
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FHIR improves semantic consistency and facilitates secure data exchange.
Citation Format
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Arnold P, Pinto dos Santos D, Bamberg F et al. FHIR – Overdue Standard for Radiology Data Warehouses. Fortschr Röntgenstr 2024; DOI 10.1055/a-2462-2351
Keywords
PACS - Data Warehouse - diagnostic radiology - Artificial Intelligence - Fast Healthcare Interoperability Resources (FHIR)Publication History
Received: 08 May 2024
Accepted after revision: 27 October 2024
Article published online:
06 December 2024
© 2024. Thieme. All rights reserved.
Georg Thieme Verlag KG
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References
- 1 Prather JC, Lobach DF, Goodwin LK. et al. Medical data mining: knowledge discovery in a clinical data warehouse. Proc AMIA Annu Fall Symp 1997; 4: 101
- 2 Kawamoto K, Houlihan CA, Balas EA. et al. Improving clinical practice using clinical decision support systems: a systematic review of trials to identify features critical to success. BMJ 2005; 330: 765
- 3 McDonald RJ, Schwartz KM, Eckel LJ. et al. The effects of changes in utilization and technological advancements of cross-sectional imaging on radiologist workload. Acad Radiol 2015; 22: 1191-1198
- 4 Xu L, Busch F, Adams LC. et al. Artificial intelligence in radiology and radiotherapy. Onkologie 2024; 1-7
- 5 Gagalova KK, Angelica Leon Elizalde M, Portales-Casamar E. et al. What You Need to Know Before Implementing a Clinical Research Data Warehouse: Comparative Review of Integrated Data Repositories in Health Care Institutions. JMIR Form Res 2020; 4
- 6 Nemati HR, Steiger DM, Iyer LS. et al. Knowledge warehouse: an architectural integration of knowledge management, decision support, artificial intelligence and data warehousing. Decis Support Syst 2002; 33: 143-161
- 7 Murphy SN, Dubey A, Embi PJ. et al. Current State of Information Technologies for the Clinical Research Enterprise across Academic Medical Centers. Clin Transl Sci 2012; 5: 281-284
- 8 MacKenzie SL, Wyatt MC, Schuff R. et al. Practices and perspectives on building integrated data repositories: results from a 2010 CTSA survey. J Am Med Informatics Assoc 2012; 19: e119-e124
- 9 Der Kerndatensatz der Medizininformatik-Initiative. Accessed April 29, 2024 at: https://www.medizininformatik-initiative.de/de/der-kerndatensatz-der-medizininformatik-initiative
- 10 Ayaz M, Pasha MF, Alzahrani MY. et al. The Fast Health Interoperability Resources (FHIR) Standard: Systematic Literature Review of Implementations, Applications, Challenges and Opportunities. JMIR Med Inf 2021; 9 (07) e21929 https://medinform.jmir.org/2021/7/e21929
- 11 HIMSS Dictionary of Healthcare Information Technology Terms, Acronyms and Organizations. Taylor & Francis; 2006
- 12 Noumeir R. Benefits of the DICOM structured report. J Digit Imaging 2006; 19: 295-306
- 13 Clunie DA. DICOM structured reporting. PixelMed publishing 2000;
- 14 Mustra M, Delac K, Grgic M. Overview of the DICOM standard. In: 2008 50th International Symposium ELMAR. 2008
- 15 Benson T. HL7 Version 2 BT – Principles of Health Interoperability HL7 and SNOMED. In: Benson T. . London: Springer London; 2012: 101-119
- 16 Viangteeravat T, Anyanwu MN, Nagisetty VR. et al. Clinical data integration of distributed data sources using Health Level Seven (HL7) v3-RIM mapping. J Clin Bioinforma 2011; 1: 1-10
- 17 Lee D, de Keizer N, Lau F. et al. Literature review of SNOMED CT use. J Am Med Informatics Assoc 2014; 21: e11-e19
- 18 Marwede D, Daumke P, Marko K. et al. RadLex – Deutsche version: Ein radiologisches lexikon zur indexierung von bild- und befunddaten. Fortschr Röntgenstr 2009; 181: 38-44
- 19 McDonald CJ, Huff SM, Suico JG. et al. LOINC, a universal standard for identifying laboratory observations: a 5-year update. Clin Chem 2003; 49: 624-633
- 20 Vreeman DJ, Abhyankar S, Wang KC. et al. The LOINC RSNA radiology playbook – a unified terminology for radiology procedures. J Am Med Informatics Assoc 2018; 25: 885-893
- 21 Ivanović M, Budimac Z. An overview of ontologies and data resources in medical domains. Expert Syst Appl 2014; 41: 5158-5166
- 22 Cimino JJ. Desiderata for Controlled Medical Vocabularies in the Twenty-First Century. Methods Inf Med 1998; 37: 394
- 23 Gruber TR. Toward principles for the design of ontologies used for knowledge sharing?. Int J Hum Comput Stud 1995; 43: 907-928
- 24 Mildenberger P. The Essence of HL7, DICOM, and IHE BT – Basic Knowledge of Medical Imaging Informatics: Undergraduate Level and Level I. In: van Ooijen PMA. . Cham: Springer International Publishing; 2021: 15-23
- 25 IHE. IHR Category:FHIR. Accessed July 01, 2024 at: https://wiki.ihe.net/index.php/Category:FHIR
- 26 HL7 Messaging Standard Version 2.9. Accessed April 29, 2024 at: https://www.hl7.org/implement/standards/product_brief.cfm?product_id=516
- 27 Sharma M, Aggarwal H. HL-7 Based Middleware Standard for Healthcare Information System: FHIR. Lect Notes Networks Syst 2019; 46: 889-899
- 28 Zhu S-H, Rao N-N. Design and Implementation of HL7 V3 Gateway. J Electron Sci Technol China 2005; 3
- 29 Smith B, Ceusters W. HL7 RIM: An Incoherent Standard. Stud Health Technol Inform 2006; 124: 133-138
- 30 Bender D, Sartipi K. HL7 FHIR: An agile and RESTful approach to healthcare information exchange. Proc CBMS 2013 – 26th IEEE Int Symp Comput Med Syst. 2013
- 31 Marcus JS, Martens B, Carugati C. et al. The European Health Data Space. SSRN Electron J 2022;
- 32 Open Source Implementations – FHIR – Confluence. Accessed April 29, 2024 at: https://confluence.hl7.org/display/FHIR/Open+Source+Implementations
- 33 GitHub – hapifhir/hapi-fhir-jpaserver-starter. Accessed April 29, 2024 at: https://github.com/hapifhir/hapi-fhir-jpaserver-starter
- 34 Overview of Docker Desktop | Docker Docs. Accessed April 29, 2024 at: https://docs.docker.com/desktop/
- 35 GitHub – microsoft/FHIR-Converter: Conversion utility to translate legacy data formats into FHIR. Accessed April 29, 2024 at: https://github.com/microsoft/FHIR-Converter
- 36 GitHub – LinuxForHealth/hl7v2-fhir-converter: Converts HL7 v2 Messages to FHIR Resources. Accessed April 29, 2024 at: https://github.com/LinuxForHealth/hl7v2-fhir-converter
- 37 Resource Description Framework (RDF) Model and Syntax Specification. Accessed March 27, 2024 at: https://www.w3.org/TR/1999/REC-rdf-syntax-19990222/
- 38 Berners-Lee T, Hendler J, Lassila O. (PDF) The Semantic Web: A New Form of Web Content That is Meaningful to Computers Will Unleash a Revolution of New Possibilities. Sci Am 2001;
- 39 Fensel D, Facca FM, Simperl E. et al. Semantic Web. Semant Web Serv 2011; 87-104
- 40 Prud’hommeaux E, Collins J, Booth D. et al. Development of a FHIR RDF data transformation and validation framework and its evaluation. J Biomed Inform 2021; 117: 103755
- 41 Lehmann J, Bühmann L. AutoSPARQL: Let users query your knowledge base. Lect Notes Comput Sci (including Subser Lect Notes Artif Intell Lect Notes Bioinformatics) 2011; 6643: 63-79
- 42 Perevalov A, Yan X, Kovriguina L. et al. Knowledge Graph Question Answering Leaderboard: A Community Resource to Prevent a Replication Crisis. Lang Resour Eval Conf Lr 2022; 2998-3007
- 43 Xiao G, Pfaff E, Prud’hommeaux E. et al. FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model. J Biomed Inform 2022; 134: 1-23