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DOI: 10.1055/s-0034-1382951
Feature Selection for the Identification of Antitumor Compounds in the Alcohol Total Extracts of Curcuma longa
Publication History
received 26 February 2013
revised 10 June 2014
accepted 01 July 2014
Publication Date:
21 August 2014 (online)
Abstract
Antitumor activity has been reported for turmeric, the dried rhizome of Curcuma longa. This study proposes a new feature selection method for the identification of the antitumor compounds in turmeric total extracts. The chemical composition of turmeric total extracts was analyzed by gas chromatography-mass spectrometry (21 ingredients) and high-performance liquid chromatography-mass spectrometry (22 ingredients), and their cytotoxicity was detected through an 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay against HeLa cells. A support vector machine for regression and a generalized regression neural network were used to research the composition-activity relationship and were later combined with the mean impact value to identify the antitumor compounds. The results showed that six volatile constituents (three terpenes and three ketones) and seven nonvolatile constituents (five curcuminoids and two unknown ingredients) with high absolute mean impact values exhibited a significant correlation with the cytotoxicity against HeLa cells. With the exception of the two unknown ingredients, the identified 11 constituents have been reported to exhibit cytotoxicity. This finding indicates that the feature selection method may be a supplementary tool for the identification of active compounds from herbs.
Key words
Curcuma longa - Zingiberaceae - GC-MS - HPLC-MS - composition-activity relationship model - mean impact value-
References
- 1 Suntar I, Kupeli Akkol E, Keles H, Yesilada E, Sarker SD, Arroo R, Baykal T. Efficacy of Daphne oleoides subsp. kurdica used for wound healing: identification of active compounds through bioassay guided isolation technique. J Ethnopharmacol 2012; 141: 1058-1070
- 2 Meickle T, Matthew S, Ross C, Luesch H, Paul V. Bioassay-guided isolation and identification of desacetylmicrocolin B from Lyngbya cf. polychroa . Planta Med 2009; 75: 1427-1430
- 3 Boccard J, Kalousis A, Hilario M, Lanteri P, Hanafi M, Mazerolles G, Wolfender JL, Carrupt PA, Rudaz S. Standard machine learning algorithms applied to UPLC-TOF/MS metabolic fingerprinting for the discovery of wound biomarkers in Arabidopsis thaliana . Chemometr Intell Lab 2010; 104: 20-27
- 4 Xiang Z, Wang XQ, Cai XJ, Zeng S. Metabolomics study on quality control and discrimination of three Curcuma species based on gas chromatograph-mass spectrometry. Phytochem Anal 2011; 22: 411-418
- 5 Kvalheim OM, Chan HY, Benzie IFF, Szeto YT, Tzang AHC, Mok DKW, Chau FT. Chromatographic profiling and multivariate analysis for screening and quantifying the contributions from individual components to the bioactive signature in natural products. Chemometr Intell Lab 2011; 107: 98-105
- 6 Tistaert C, Dejaegher B, Chataigne G, Riviere C, Hoai NN, Van MC, Quetin-Leclercq J, Heyden YV. Potential antioxidant compounds in Mallotus species fingerprints. Part II: fingerprint alignment, data analysis and peak identification. Anal Chim Acta 2012; 721: 35-43
- 7 Jiang JL, Jin XL, Zhang H, Su X, Qiao B, Yuan YJ. Identification of antitumor constituents in curcuminoids from Curcuma longa L. based on the composition–activity relationship. J Pharm Biomed Anal 2012; 70: 664-670
- 8 Jiang JL, Ding HT, Su X, Yuan YJ. Identification of anti-tumor ingredients in Curcuma volatile oil based on composition-activity relationship. J Anal Chem 2012; 40: 1488-1493
- 9 Shi H, Lu Y, Du J, Du W, Ye X, Yu X, Ma J, Cheng J, Gao Y, Cao Y, Zhou L, Li Q. Application of back propagation artificial neural network on genetic variants in adiponectin ADIPOQ, peroxisome proliferator-activated receptor-γ, and retinoid X receptor-α genes and type 2 diabetes risk in a Chinese Han population. Diabetes Technol Ther 2012; 14: 293-300
- 10 Wei L, Zhao YN, Song YX, Yang ZH. SVM feature selection and sample regression for Chinese medicine research. International Conference on Information and Automation, Proceedings 2008. Changsha: IEEE; 2008: 1773-1777
- 11 Guyon I, Weston J, Barnhill S. Gene selection for cancer classification using support vector machines. Mach Learn 2002; 46: 389-422
- 12 Roldán C, de la Torre A, Mota S, Morales-Soto A, Menéndez J, Segura-Carretero A. Identification of active compounds in vegetal extracts based on correlation between activity and HPLC–MS data. Food Chem 2013; 136: 392-399
- 13 Jiang JL, Su X, Ding HT, Zhou PP, Han SN, Yuan YJ. A novel approach to evaluate the quality and identify the active compounds of Curcuma essential oil. Anal Lett 2013; 46: 1-16
- 14 Jiang JL, Su X, Zhang H, Zhang XH, Yuan YJ. A novel approach to active compounds identification based on support vector regression model and mean impact value. Chem Biol Drug Des 2013;
- 15 Chen C, Li SX, Wang SM, Liang SW. A support vector machine based pharmacodynamic prediction model for searching active fraction and ingredients of herbal medicine: Naodesheng prescription as an example. J Pharm Biomed Anal 2011; 56: 443-447
- 16 Yang SY, Huang Q, Li LL, Ma CY, Zhang H, Bai R, Teng QZ, Xiang ML, Wei YQ. An integrated scheme for feature selection and parameter setting in the support vector machine modeling and its application to the prediction of pharmacokinetic properties of drugs. Artif Intell Med 2009; 46: 155-163
- 17 Gao L, Ren SX. Combining artificial neural networks with data fusion to analyze overlapping spectraof nitroaniline isomers. Chemometr Intell Lab 2011; 107: 275-281
- 18 Wang JX, Fu ZG, Jin T, Chen Y. Main steam flow measurement based on generalized regression neural network. J Chin Soc Power Eng 2012; 32: 130-134
- 19 Choudhuri T, Pal S, Agwarwal ML, Das T, Sa G. Curcumin induces apoptosis in human breast cancer cells through p 53-dependent Bax induction. FEBS Lett 2002; 512: 334-340
- 20 Anuchapreeda S, Tima S, Duangrat C, Limtrakul P. Effect of pure curcumin, demethoxycurcumin, and bisdemethoxycurcumin on WT1 gene expression in leukemic cell lines. Cancer Chemoth Pharm 2008; 62: 585-594
- 21 Cao J, Liu Y, Jia L, Zhou HM, Kong Y, Yang G, Jiang LP, Li QJ, Zhong LF. Curcumin induces apoptosis through mitochondrial hyperpolarization and mtDNA damage in human hepatoma G2 cells. Free Radical Biol Med 2007; 43: 968-975
- 22 Yue GG, Chan BC, Hon PM, Lee MY, Fung KP, Leung PC, Lau CB. Evaluation of in vitro anti-proliferative and immunomodulatory activities of compounds isolated from Curcuma longa . Food Chem Toxicol 2010; 48: 2011-2020
- 23 Wang HJ, Yan HP. Effects of turmeric volatile oil on the morphology of human lung adenocarcinoma A549 cells. Acta Acad Med Mil Tertiae 2005; 27: 220-222
- 24 Bonfiglio R, King RC, Olah TV, Merkle K. The effects of sample preparation methods the variability of the electrospray ionization response for model drug compounds. Rapid Commun Mass Spectrom 1999; 13: 1175-1185
- 25 Chambers E, Wagrowski-Diehl DM, Lu Z, Mazzeo JR. Systematic and comprehensive strategy for reducing matrix effects in LC/MS/MS analyses. J Chromatogr B 2007; 852: 22-34
- 26 Matuszewski BK, Constanzer ML, Chavez-Eng CM. Strategies for the assessment of matrix effect in quantitative bioanalytical methods based on HPLC-MS/MS. Anal Chem 2003; 75: 3019-3030
- 27 Li M, Zhou X, Zhao Y, Wang DP, Hu XN. Quality Assessment of Curcuma longa L. by Gas Chromatography-Mass Spectrometry Fingerprint, Principle Components Analysis and Hierarchical Clustering Analysis. Bull Korean Chem Soc 2009; 30: 2287-2293
- 28 Herebian D, Choi JH, Abd El-Aty AM, Shim JH, Spiteller M. Metabolite analysis in Curcuma domestica using various GC-MS and LC-MS separation and detection techniques. Biomed Chromatogr 2009; 23: 951-965
- 29 Babu GDK, Shanmugam V, Ravindranath SD, Joshi VP. Comparison of chemical composition and antifungal activity of Curcuma longa L. leaf oils produced by different water distillation techniques. Flavour Frag J 2007; 22: 191-196
- 30 Savitzky A, Golay MJE. Smoothing and differentiation of data by simplified least squares procedures. Anal Chem 1964; 36: 1627-1639
- 31 Arneberg R, Rajalahti T, Flikka K, Berven FS, Kroksveen AC, Berle M, Myhr KM, Vedeler CA, Ulvik RJ, Kvalheim OM. Pretreatment of mass spectral profiles: application to proteomic data. Anal Chem 2007; 79: 7014-7026
- 32 Sun XY, Zheng YP, Li DS, Yan HF. In vivo studies on anti-tumor effects of the emulsion injection extracted from turmeric volatile oil and active constituents. Chin Pharmacol Bull 2008; 24: 976-977
- 33 Aratanechemuge Y, Komiya T, Moteki H, Lmai K, Hibasami H. Selective induction of apoptosis by ar-turmerone isolated from turmeric (Curcuma longa L.) in two human leukemia cell lines, but not in human stomach cancer cell line. Int J Mol Med 2002; 9: 481-484
- 34 National Cancer Institute, Division of Cancer Prevention and Control. Clinical development plan: curcumin. J Cell Biochem 1996; 26: 72-85
- 35 Zhong Z, Chen X, Tan W, Xu Z, Zhou K, Wu T, Cui L, Wang Y. Germacrone inhibits the proliferation of breast cancer cell lines by inducing cell cycle arrest and promoting apoptosis. Eur J Pharmacol 2011; 667: 50-55
- 36 Ju JF, Yu WP, Fu CS, Ma LM. Modern research and clinical application of β-elemene. Qilu Pharmaceutical Affairs 2008; 27: 546-548
- 37 Zhang HY, Hu CX, Liu CP, Li HF, Wang JS, Yuan KL, Tang JW, Xu GW. Screening and analysis of bioactive compounds in traditional Chinese medicines using cell extract and gas chromatography-mass spectrometry. J Pharm Biomed Anal 2007; 43: 151-157
- 38 Lampronti I, Saab AM, Gambari R. Antiproliferative activity of essential oils derived from plants belonging to the Magnoliophyta division . Int J Oncol 2006; 25: 989-995