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DOI: 10.1055/s-0038-1634107
Medical Informatics and Bioinformatics: Integration or Evolution through Scientific Crises?
Publication History
Received: 27 January 2005
accepted: 10 October 2005
Publication Date:
07 February 2018 (online)
Summary
Objectives: To contribute a new perspective on recent investigations into the scientific foundations of medical informatics (MI) and bioinformatics (BI). To support efforts that could generate synergies and new research directions.
Methods: MI and BI are compared and contrasted from a philosophy of science perspective. Historical examples from MI and BI are analyzed based on contrasting viewpoints about the evolution of scientific disciplines.
Results: Our analysis suggests that the scientific approaches of MI and BI involve different assumptions and foundations, which, together with largely non-overlapping communities of researchers for the two disciplines, have led to different courses of development. We indicate how their respective application domains, medicine, and biology may have contributed to these differences in development.
Conclusions: An analysis from the point of view of the philosophy of science is characteristic of established scientific disciplines. From a Kuhnian perspective, both disciplines may be entering a period of scientific crisis, where their foundations are questioned and where new ideas (or paradigm shifts) and a progressive research programme are needed to advance them scientifically. We discuss research directions and trends both supporting and challenging integration of the subdisciplines of MI and BI into a unified field of biomedical informatics (BMI), centered around the evolution of information cybernetics.
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References
- 1 Kitano H. Systems biology: a brief overview. Science 2002; 295: 1662-4.
- 2 Kiberstis P, Roberts L. It’s Not Just the Genes. Science 2002; 296: 685.
- 3 Altmuller J. et al Genomewide scans of complex human diseases: true linkage is hard to find. Am J Hum Genet 2001; 69 (05) 936-50.
- 4 Strohman R. Maneuvering in the complex path from genotype to phenotype. Science 2002; 296 5568 701-3.
- 5 van Bemmel J, Musen M. Handbook of Medical Informatics. Heidelberg: Springer Verlag 1997
- 6 Collen M. A History of Medical Informatics in the Unites States: 1950 to 1990. Bethesda: AMIA, Hartman Publishing 1995
- 7 Greenes RA, Shortliffe EH. Medical Informatics: An Emerging Academic Discipline and Institutional Priority. JAMA 1990; 263: 1114-20.
- 8 van Bemmel JH. Medical informatics, art or science?. Methods Inf Med 1996; 35 (03) 157-72.
- 9 Shahar Y. Medical informatics: between science and engineering, between academia and industry. Methods Inf Med 2002; 41 (01) 8-11.
- 10 Maojo V, Crespo J. Challenges for future intelligent systems in biomedicine. Journal of Intelligent and Fuzzy Systems 2002; 12 (01) 1-3.
- 11 Altman R.. Bioinformatics in support of molecular medicine. In Chute CG. (ed). AMIA Ann Symp, Orlando 1998; pp 53-61.
- 12 Altman R. The Interactions between Clinical Informatics and Bioinformatics. JAMIA 2000; 7 (05) 439-43.
- 13 Kohane I. Bioinformatics and clinical informatics: the imperative to collaborate. J Am Med Inform Assoc 2000; 41: 20-4.
- 14 Martin-Sanchez F.. BIOINFOMED. Prospective Analysis of the Relationships and Synergy Between Medical Informatics and Bioinformatics. Brussels, European Commission 2002
- 15 Maojo V, Kulikowski CA. Bioinformatics and medical informatics: collaborations on the road to genomic medicine?. JAMIA 2003; 10 (06) 515-22.
- 16 Popper KR. The Logic of Scientific Discovery. London: Hutchinson 1972
- 17 Popper KR. Conjectures and Refutations. The Growth of Scientific Knowledge. London: Routledge & Kegan Paul 1972
- 18 Popper KR. Poverty of Historicism. Routledge 1993
- 19 Kuhn T. The Structure of Scientific Revolutions. 2nd ed. Chicago: University of Chicago Press 1970
- 20 McMullin E. Rationality and Paradigm Change in Science. In Horwich P. (ed) World Changes: Thomas Kuhn and the Nature of Science, Boston: The MIT Press 1993; pp 55-78.
- 21 Chalmers A. What is this thing called Science? 3rd edition. University of Queensland Press 1999
- 22 Planck M. Scientific Autobiography and other Papers. New York: Philosophical Library 1949
- 23 Laudan L. Progress and its Problems: Towards a Theory of Scientific Growth. Berkeley: University of California Press 1977
- 24 Lakatos I. The Methodology of Scientific Research Programmes (Philosophical Papers Volume I). Cambridge University Press 1980
- 25 Toulmin S. Cosmopolis: The Hidden Agenda of Modernity. Chicago, USA: University of Chicago Press 1992
- 26 Feyerabend PK. Against Method: Outline of an Anarchist Theory of Knowledge. London, UK: New Left Books 1970
- 27 Deutsch D. The Fabric of Reality: The Science of Parallel Universes - And Its Implications. London, UK: Penguin Books 1997
- 28 Lorenz K. Behind the Mirror. Harvest/HBJ Book 1978
- 29 Kuhn T. The Essential Tension: Selected Studies in Scientific Tradition and Change. Chicago: University of Chicago Press 1977
- 30 Blum B, Duncan K. (eds) A History of Medical Informatics. Reading: Addison Wesley Pub 1990
- 31 Ledley RS, Lusted L. Reasoning Foundations of Medical Diagnosis. Science 1959; 130: 9-21.
- 32 Lodwick GS. et al Computer diagnoses of primary bone tumors: a preliminary report. Radiology 1963; 80: 273-5.
- 33 Crick FHC. The Biological Replication of Macromolecules. Symp Soc Exp Biol 1958; XII: 138.
- 34 Hagen J. The origins of bioinformatics. Nat Rev Genetics 2000; 1: 231-6.
- 35 Lander ES. et al Initial sequencing and analysis of the human genome. Nature 2001; 409 6822 860-921.
- 36 Karp PD. et al The EcoCyc Database. Nucleic Acids Res 2002; 30 (01) 56-8.
- 37 Thagard P. How scientists explain disease. Princeton University Press 2000
- 38 Szolovits P. (ed) Artificial Intelligence in Medicine. AAAS Selected Symposium 51. Boulder: Westview Press. 1982
- 39 Wiener N. Cybernetics or Control and Communication in the Animal and the Machine. 2nd Edition. Boston: The MIT Press 1965
- 40 Heims SJ. The Cybernetics Group. Cambridge, MA: The MIT Press 1991
- 41 Kay L. Who Wrote the Book of Life: A History of Code. Stanford: Stanford University Press 2000
- 42 Wiener N.. The Human Use of Human Beings. Boston: Houghton Mifflin. 1950
- 43 Wiener N.. God, Golem, Inc. A Comment on Certain Points Where Cybernetics Impinges on Religion. Cambridge (Mass.): The MIT Press 1964
- 44 Simon H. The Sciences of the Artificial. 2nd Edition. Cambridge, MA: The MIT Press 1969
- 45 Vitkup D. et al. The amino acid mutational spectrum of human genetic disease. Genome Biology 2003 4. R72.
- 46 Brinkley JF. Structural informatics and its applications in medicine and biology. Acad med 1991; 66 (010) 589-91.
- 47 Weatherall D. Science and the Quiet Art. Medical Research and Patient Care. Oxford: Oxford University Press 1985
- 48 Weinberg S. Facing Up. Science and Its Cultural Adversaries. Cambridge: Harvard University Press 2001
- 49 Maojo V, Martin-Sanchez F. Bioinformatics: Towards New Directions for Public Health. Methods Inf Med 2004; 43: 208-14.
- 50 Prince A. et al Containing Acute Disease Outbreak. Methods Inf Med 2005; 44: 603-8.