Model-enhanced neuroimaging: clinical, research, and educational applications

W. L. Nowinski

doi:10.1055/s-0038-1638137

Yearbook of Medical Informatics, Table of Contents

Yearb Med Inform 2002; 11(01): 118-130
DOI: 10.1055/s-0038-1638137

Review

Georg Thieme Verlag KG

Model-enhanced neuroimaging: clinical, research, and educational applications

W. L. Nowinski

¹Medical Imaging Lab Kent Ridge Digital Labs Singapore

› Author Affiliations

Abstract

Full Text

References

References
1 A.D.A.M. Animated Dissection of Anatomy for Medicine. Users’s Guide. A.D.A.M. Software Inc. 1994
2 Afshar E, Watkins ES, Yap JC. Stereotactic Atlas of the Human Brainstem and Cerebellar Nuclei. New York: Raven Press; 1978
3 Andrew J, Watkins ES. A Stereotaxic Atlas of the Human Thalamus and Adjacent Structures. A Variability Study. Baltimore: Williams and Wilkins; 1969
4 Atkins MS, Mackiewich B. Fully automatic segmentation of the brain in MRI. IEEE Trans Med Imaging 1998; 17 (01) 98-107.
5 Bajcsy R, Lieberson R. and Reivich M. A computerized system for elastic matching of deformed radiographic images to idealized atlas images. J Comput Assist Tomogr 1983; 7 (06) 618-25.
6 Bajcsy R, Kovacic S. Multiresolution elastic matching. Computer Vision, Graphics and Image Processing 1989; 46: 1-21.
7 Bertrand G, Olivier A, Thompson CJ. Computer display of stereotaxic brain maps and probe tracts. Acta Neurochir Suppl 1974; 21: 235-43.
8 Bohm C, Greitz T, Eriksson L. A computerized adjustable brain atlas. Eur J Nucl Med 1983; 15: 687-9.
9 Bookstein F. Principal warps: thin-plate splines and the decomposition of deformations. IEEE Trans. Pattern Analysis and Machine Intelligence 1989; 11 (06) 567-85.
10 Brown LG. A survey of image reconstruction techniques. ACM Computing Surveys 1992; 24 (04) 325-76.
11 Collins DL, Neelin P, Peters TM, Evans AC. Automatic 3D intersubject registration of MR volumetric data into standardized Talairach space. J Comput Assist Tomogr 1994; 18 (02) 192-205.
12 Collins DL, Evans AC. Animal: validation and application of non-liner registrationbased segmentation. International Journal of Pattern Recognition and Artificial Intelligence 1997; 11: 1271-94.
13 Christensen GE, Joshi SC, Miller I M. Volume geometric transformations for mapping anatomy. IEEE Trans Med Imaging 1997; 16: 864-77.
14 Clarke LP, Velthuizen RP, Camacho MA, Heine JJ, Vaidyanathan M, Hall LO, Thatcher RW, Silbiger ML. MRI segmentation: methods and applications. Magn Reson Imaging 1995; 13 (03) 334-68.
15 Davatzikos C. Spatial transformation and registration of brain images using elastically deformable model. Comput Vis Image Underst 1997; 66 (02) 207-22.
16 DeArmond SJ, Fusco MM and Dewey MM. Structure of the Human Brain. A Photographics Atlas. 3rd ed. New York: Oxford University Press; 1989
17 Dev P, Coppa G. P. and Tancred E. Brain Storm: desiging an interactive neuroanatomy atlas. Radiology 1992; 185: 413
18 Drebin R, Carpenter L, Harrahan P. Volume rendering. Comput Graph (ACM) 1988; 24 (04) 64-75.
19 Duvernoy H.M. The Human Hippocampus: an Atlas of Applied Anatomy. Bergman, Munch: 1988
20 Evans AC, Collins DL, Milner B. An MRI-based stereotactic brain atlas from 300 young normal subjects. Proceedings of the 22nd Symposium of the Society for Neuroscience; Anaheim. 1992: 408
21 Fix JD. Atlas of the Human Brain and Spinal Cord. Rockville: Aspen; 1987
22 Fox PT, Mikiten S, Davis G, Lancaster JL. Brain Map: a database of human functional brain mapping. In Thatcher RW, Hallett M, Zeffiro T, John ER, Huerta M. editors Functional Neuroimaging: Technical Foundations; 1994: 95-106.
23 Fu KS, Mui JK. A survey of image segmentation. Pattern Recognition 1981; 13 (01) 3-16.
24 Gee JC, Reivich M, Bajcsy R. Elastically deforming an atlas to match anatomical brain images. J Comput Assist Tomogr 1993; 17 (02) 225-36.
25 Golland P, Kikinis R, Halle M, Umans C, Grimson WE, Shenton ME. et al. Anatomy Browser: a novel approach to visualization and integration of medical information. Comput Aid Surg 1999; 4: 129-43.
26 Gold S, Christian B, Arndt S, Zeien G, Cizadlo T, Johnson DL. et al. Functional MRI statistical software packages: a comparative analysis. Hum Brain Mapp 1998; 6: 73-84.
27 Grachev D, Berdichevsky D, Rauch SL, Heckers S, Kennedy DN, Caviness VS. et al. A method for assessing the accuracy of intersubject registration of the human brain using anatomic landmarks. Neuroimage 1999; Feb 9 (02) 250-68.
28 Greitz T, Bohm C, Holte S. et al. A computerized brain atlas: construction, anatomical content, and some applications. J Comput Assist Tomogr 1991; 15 (01) 26-38.
29 Hardy TL, Deming LR, Harris-Collazo R. Computerized stereotactic atlases. In Alexander III E, Maciunas RJ. editors Advanced Neurosurgical Navigation. New York: Thieme; 1999: 115-24.
30 Höhne KH. VOXEL-MAN, Part 1: Brain and Skull. Heidelberg: Springer-Verlag; 1995
31 Höhne KH, Pflesser B, Pommert A, Riemer M, Schubert R, Schiemann T. et al. A realistic model of human structure from the Visible Human data. Methods Inf Med. 2001: 83-9.
32 Kall BA. Computer-assisted stereotactic functional neurosurgery. In Kelly PJ, Kall BA. editors Computers in Stereotactic Neurosurgery. Boston: Blackwell; 1992: 134-42.
33 Kapur T, Grimson WEL, Wells III WM, Kikinis R. Segmentation of brain tissue from magnetic resonance images. Med Image Anal 1996; 1 (02) 109-27.
34 Kazarnovskaya I M, Borodkin SM, Shabalov VA, Krivosheina VY, Golanov AV. 3-D computer model of subcortical structures of human brain. Comput Biol Med 1991; 21 (06) 451-7.
35 Kikinis R, Shenton ME, Iosifescu DV. et al. A digital brain atlas for surgical planning, model-driven segmentation, and teaching. IEEE Transactions on Visualization and Computer Graphics 1996; 2 (03) 232-41.
36 Kockro RA, Serra L, Yeo TT, Chan C, Sitoh YY, Chua GG. et al. Planning and simulation of neurosurgery in a virtual reality environment. Neurosurgery 2000; 46 (01) 118-37.
37 Kraus GE, Bailey GJ. Microsurgical Anatomy of the Brain. A Stereo Atlas. Baltimore: Wiliams & Wilkins; 1994
38 Lancaster JL, Woldorff MG, Parsons LM, Liotti M, Freitas CS, Rainey L. et al. Automated Talairach atlas labels for functional brain mapping. Hum Brain Mapp 2000; 10 (03) 120-31.
39 Lehmann ED, Hawkes D, Hill D, Bird CF, Robinson GP, Colchester AC. et al. Computer-aided interpretation of SPECT images of the brain using an MRI-derived neuroanatomic atlas. Med Inform 1991; 16: 151-66.
40 Levoy M. Display of surfaces from volume data. IEEE Computer Graphics and Applications 1988; 8 (05) 29-37.
41 Lorensen W, Cline H. Marching cubes: a high resolution3Dsurfaceconstructionalgorithm. Comput Graph 1987; 21: 163-9.
42 Maintz JBA, Viergever MA. A survey of medical image registration. Med Image Anal 1998; 2 (01) 1-36.
43 Martin J. Neuroanatomy. Text and Atlas. Norwalk: Appleton & Lange; 1989
44 Mazziotta JC, Toga AW, Evans AC, Fox P, Lancaster J. A probabilistic atlas of the human brain: theory and rationale for its development. Neuro Image 1995; 2: 89-101.
45 Mazziotta JC. Imaging: window on the brain. Arch Neurol 2000; 57 (10) 1413-21.
46 McInerney T, Terzopoulos D. Deformable models in medical image analysis: a survey. Med Image Anal 1996; 1 (02) 91-108.
47 McMinn RMH, Hutchings RT, Pegington J, Abrahams P. Color Atlas of Human Anatomy. 3rd ed. Mosby Year Book. St. Louis; 1993
48 Netter FH. The CIBA Collection of Medical Illustrations. Vol 1: Nervous System. CIBA. 1991
49 Nieuwennhuys R, Voogd J, van Huijzen C. The Human Central Nervous System. A Synopsis and Atlas. 2nd ed. Berlin: Springer-Verlag; 1981
50 Niemann K, van den Boom R, Haeselbarth K, Afshar F. A brainstem stereotactic atlas in a three-dimensional magnetic resonance imaging navigation system: first experiences with atlas-to-patient registration. J Neurosurg 1999; 90 (05) 891-901.
51 Niemann K, van Nieuwenhofen I. One atlas-three anatomies: relationships of the Schaltenbrand and Wahren microscopic data. Acta Neurochir (Wien) 1999; 141 (010) 1025-38.
52 Nowinski WL, Ho WC. Generalized transfer functions and their use for three-dimensional neuroimaging. Proc SPIE Medical Imaging 1994: Image Capture, Formatting, and Display, Newport Beach, CA, USA, February. 1994. SPIE Vol.2164 34-45.
53 Nowinski WL, Bryan RN, Raghavan R. The Electronic Clinical Brain Atlas. Multiplanar Navigation of the Human Brain. New York – Stuttgart: Thieme; 1997
54 Nowinski WL, Fang A, Nguyen BT, Raphel JK, Jagannathan L, Raghavan R. et al. Multiple brain atlas database and atlas-based neuroimaging system. Comput Aid Surg 1997; 2 (01) 42-66.
55 Nowinski WL. Anatomical targeting in functional neurosurgery by the simultaneous use of multiple Schaltenbrand-Wahren brain atlas microseries. Stereotact Funct Neurosurg 1998; 71: 103-16.
56 Nowinski WL, Yeo TT, Thirunavuukarasuu A. Microelectrode-guided functional neurosurgery assisted by Electronic Clinical Brain Atlas CD-ROM. Comput Aid Surg 1998; 3 (03) 115-22.
57 Nowinski WL. Analysis of medical images by means of brain atlases. Computer Graphics and Vision 1999; 8 (03) 449-468.
58 Nowinski WL, Thirunavuukarasuu A. Methods and apparatus for processing medical images. Patent application PCT/SG00/00185. 2000
59 Nowinski WL, Thirunavuukarasuu A, Kennedy DN. Brain Atlas for Functional Imaging. Clinical and Research Applications. New York – Stuttgart: Thieme; 2000
60 Nowinski WL, Yang GL, Yeo TT. Computer-aided stereotactic functional neurosurgery enhanced by the use of the multiple brain atlas database. IEEE Trans Med Imaging 2000; 19 (01) 62-9.
61 Nowinski WL. Thirunavuukarasuu A, Srinivasan R. Brain atlas for neuroradiology. Scientific Program, 86^thRadiological Society of North America Annual Meeting, Nov-Dec. Chicago: IL, USA, Supplement to Radiology; 2000. 217 (P) 620
62 Nowinski WL. Computerized atlases for surgery of movement disorders. Seminars in Neurosurgery 2001; 12 (02) 183-94.
63 Nowinski WL. Electronic brain atlases: features and applications. In Caramella D, Bartolozzi C. editors 3D Image Processing: Techniques and Clinical Applications. Medical Radiology series, Heidelberg: Springer-Verlag; 2002
64 Nowinski WL. Modified Talairach landmarks. Acta Neurochir 2001; 143 (10) 1045-57.
65 Nowinski WL. Computer-aided brain surgery: present and future. In Caramella D, Bartolozzi C. editors 3D Image Processing: Techniques and Clinical Applications. Medical Radiology series, Heidelberg: Springer-Verlag; 2002
66 Nowinski WL, Benabid AL. New directions in atlas-assisted stereotactic functional neurosurgery. In Germano IM. editor Advanced Techniques in Image-Guided Brain and Spine Surgery. Thieme, New York: Thieme; 2002
67 Nowinski WL, Thirunavuukarasuu A. Electronic atlases show value in brain studies. Diagnostic Imaging Asia Pacific 2001; 8 (02) 35-9.
68 Nowinski WL, Thirunavuukarasuu A. Atlas-assisted localization analysis of functional images. Med Image Anal 2001; 5 (03) 207-20.
69 Nowinski WL, Thirunavuukarasuu A, Belov A, Yang YJ. Web-based atlas for neuroradiology. Proc American Society of Neuroradiology 39^thAnnual Meeting ASNR2001, 23-27 April. 2001. Boston, MA, USA: 500 Available from http://www.cerefy.com
70 Nowinski WL, Thirunavuukarasuu A Bryan RN. Cerefy Student Brain Atlas. KRDL, Singapore: KRDL; 2001
71 Nowinski WL, Chui CK. Simulation of interventional neuroradiology procedures. Proc Medical Imaging and Augmented Reality MIAR2001, Hong Kong, 10-12 June. IEEE Computer Society Press; 2001: 87-94.
72 Ono M, Kubik S, Abernathey CD. Atlas of the Cerebral Sulci. Stuttgart-New York: Georg Thieme Verlag/Thieme Medical Publishers; 1990
73 Pal NR, Pal SK. A review of image segmentation techniques. Pattern Recognition 1993; 26 (09) 1227-49.
74 Robb RA, Hanson DP. The ANALYZE software system for visualization and analysis in surgery simulation. In Lavallee S, Tayor R, Burdea G, Mosges R. editors Computer Integrated Surgery: Cambridge MA: MIT Press; 1995: 175-90.
75 Schaltenbrand G. Bailey. Introduction to Stereotaxis with an Atlas of the Human Brain. Stuttgart: Georg Thieme Verlag; 1959
76 Schaltenbrand G, Wahren W. Atlas for Stereotaxy of the Human Brain. Stuttgart: Georg Thieme Verlag; 1977
77 Schiemann T, Freudenberg J, Pflesser B, Pommert A, Priesmeyer K, Riemer M. et al. Exploring the Visible Human using the VOXEL-MAN framework. Comput Med Imaging Graph 2000; 24 (03) 127-32.
78 Schitzlein HN, Murtagh FR. Imaging Anatomy of the Head and Spine. A Photographic Color Atlas of MRI, CT, Gross, and Microscopic Anatomy in Axial, Coronal, and Sagittal Planes. 2nd ed. Baltimore: Urban & Schwarzenberg; 1990
79 Schmahmann JD, Doyon J, McDonald D, Holmes C, Lavoie K, Hurwitz AS. et al. Three-dimensional MRI atlas of the human cerebellum in proportional stereotaxic space. Neuroimage 1999; 10 03 Pt 1 233-60.
80 Serra L, Nowinski WL, Poston T, Hern N, Meng LC, Guan CG. et al. The Brain Bench: virtual tools for stereotactic frame neurosurgery. Med Image Anal 1997; 1 (04) 317-29.
81 Sramka M, Ruzicky E, Novotny M. Computerized brain atlas in functional neurosurgery. Stereotact Funct Neurosurg 1997; 69 1-4 Pt 2 93-8.
82 Sundsten JW, Brinkley JF, Eno K, Prothero J. The Digital Anatomist. Interactive Brain Atlas. CD ROM for the Macintosh. Seattle: University of Washington; 1994
83 Szikla G, Bouvier G, Hori T, Petrov V. Angiography of the Human Brain Cortex: Atlas of Vascular Patterns and Stereotactic Localization. Berlin: Springer-Verlag; 1977
84 Talairach J, David M, Tournoux P, Corredor H, Kvasina T. Atlas d’Anatomie Stereotaxique des Noyaux Gris Centraux. Paris: Masson; 1957
85 Talairach J, Tournoux P. Co-Planar Stereotactic Atlas of the Human Brain. Stuttgart-New York: Georg Thieme Verlag/Thieme Medical Publishers; 1988
86 Talairach J, Tournoux P. Referentially Oriented Cerebral MRI Anatomy. Atlas of Stereotaxic Anatomical Correlations for Gray and White Matter. Stuttgart-New York: Georg Thieme Verlag/Thieme Medical Publishers; 1993
87 Thompson PM, Woods RP, Mega MS, Toga AW. Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain. Hum Brain Mapp 2000; 9 (02) 81-92.
88 Thirion JP. Image matching as a diffusion process: an analogy with Maxwell’s demons. Med Image Anal 1998; 2: 243-60.
89 Toga AW, Ambach KL, Schluender S. Highresolution anatomy from in situ human brain. Neuroimage 1994; 1 (04) 334-44.
90 Toga AW. editor Brain Warping. San Diego: Academic Press; 1998
91 Toga AW, Thompson PM. Maps of the brain. Anat Rec 2001; 265 (02) 37-53.
92 Van Buren JM, Borke RC. Variations and Connections of the Human Thalamus. New York: Springer-Verlag; 1972
93 Van Essen DC, Drury HA. Structural and functional analyses of human cerebral cortex using a surface-based atlas. J Neurosci 1997; 17 (18) 7079-102.
94 Van Essen DC, Lewis JW, Drury HA, Hadjikhani N, Tootell RB, Bakircioglu M. et al. Mapping visual cortex in monkeys and humans using surface-based atlases. Vision Res 2001; 41 10-11 (11) 1359-78.
95 Wang Y, Staib LH. Physical model-based non-rigid registration incorporating statistical shape information. Med Image Anal 2000; 4: 7-20.
96 Wells WM, Viola P, Atsumi H, Nakajima S, Kikinis R. Multi-modal volume registration by maximization of mutual information. Med Image Anal 1997; 1 (01) 35-51.
97 Westermann R, Ertl T. Efficiently using graphics hardware in volume rendering applications. Proc SIGGRAPH’98, Computer Graphics Proceedings, July. Orlando, FL: 1998: 169-78.
98 Woods RP, Mazziotta JC, Cherry SR. MRI-PET Registration with Automated Algorithm. J Comput Assist Tomogr 1993; 17: 536-46.
99 Xu MH, Srinivasan R, Nowinski WL. A fast mutual information method for multimodal registration. Lecture Notes in Computer Science, Vol. Proc Information Processing in Medical Imaging, 16th International Conference IPMI’99, June 28-July 2, Visegrad, Hungary. 1613: 466-71.
100 Xu MH, Nowinski WL. Talairach-Tournoux brain atlas registration using a metalforming principle based finite element method. Med Image Anal 2001; 5 (04) 271-9.
101 Yoshida M. Three-dimensional maps by interpolation from the Schaltenbrand and Bailey atlas. In Kelly PJ, Kall BA. editors Computers in Stereotactic Neurosurgery. Boston: Blackwell; 1992: 143-52.