Download PDF
CC BY 4.0 · Glob Med Genet 2020; 07(02): 030-034
DOI: 10.1055/s-0040-1714414
Review Article

Advances in Transcriptomics in the Response to Stress in Plants

Xiaojuan Wang   ∗
1   ChiFeng University, Hongshan, Chifeng, Inner Mongolia, People’s Republic of China
,
Na Li   ∗
2   Inner Mongolia Academy of Forestry Sciences, Inner Mongolia, Saihan, People's Republic of China
,
Wei Li
1   ChiFeng University, Hongshan, Chifeng, Inner Mongolia, People’s Republic of China
,
Xinlei Gao
1   ChiFeng University, Hongshan, Chifeng, Inner Mongolia, People’s Republic of China
,
Muha Cha
1   ChiFeng University, Hongshan, Chifeng, Inner Mongolia, People’s Republic of China
,
Lijin Qin
1   ChiFeng University, Hongshan, Chifeng, Inner Mongolia, People’s Republic of China
,
Lihong Liu
1   ChiFeng University, Hongshan, Chifeng, Inner Mongolia, People’s Republic of China
› Author Affiliations Funding This work was supported by the following projects: 1. Inner Mongolia Autonomous Region Natural Science Fund Project, No. 2018LH03003; 2. Scientific research project of institutions of higher learning in Inner Mongolia autonomous region, No. NJZZ18203; 3. Major science and technology projects of Inner Mongolia autonomous region, No. ZDZX2018009.
› Further Information
Also available at
   Permissions and Reprints

Abstract

Adverse stress influences the normal growth and development of plants. With the development of molecular biology technology, understanding the molecular mechanism of plants in response to adverse stress has gradually become an important topic for academic exploration. The expression of the transcriptome is dynamic, which reflects the level of expression of all genes in a particular cell, tissue, or organ of an individual organism at a particular stage of growth and development. Transcriptomics can disclose the expression at the whole genome level under stress from the whole transcriptional level, which can be useful in understanding the complex regulatory network associated with the adaptability and tolerance of plants to stress. In this article, we review the application of transcriptomics in understanding the response of plants to biotic stresses such as diseases and insect infestation and abiotic stresses such as water, temperature, salt, and heavy metals to provide a guideline for related research.

Keywords

transcriptomics - biotic stress - abiotic stresses

∗ Both are co-first authors.




Publication History

Article published online:
20 August 2020

© 2020. The Author(s). This is an open access article published by Thieme under the terms of the Creative Commons Attribution License, permitting unrestricted use, distribution, and reproduction so long as the original work is properly cited. (https://creativecommons.org/licenses/by/4.0/).

Georg Thieme Verlag KG
Stuttgart · New York

 

  • References

  • 1 Lian J, Zhang XC, Gu JT. Advance in transcriptomics and its application in olericulture research. Zhongguo Nongxue Tongbao 2015; 31 (08) 118-122
    Search in Google Scholar
  • 2 Anderson JT, Mitchell-Olds T. Ecological genetics and genomics of plant defenses: Evidence and approaches. Funct Ecol 2011; 25 (02) 312-324
    CrossrefPubMedSearch in Google Scholar
  • 3 De Vos M, Van Oosten VR, Van Poecke RMP. , et al. Signal signature and transcriptome changes of Arabidopsis during pathogen and insect attack. Mol Plant Microbe Interact 2005; 18 (09) 923-937
    CrossrefPubMedSearch in Google Scholar
  • 4 Li J, Zhu L, Hull JJ. , et al. Transcriptome analysis reveals a comprehensive insect resistance response mechanism in cotton to infestation by the phloem feeding insect Bemisia tabaci (whitefly). Plant Biotechnol J 2016; 14 (10) 1956-1975
    CrossrefPubMedSearch in Google Scholar
  • 5 Misra P, Pandey A, Tiwari M. , et al. Modulation of transcriptome and metabolome of tobacco by Arabidopsis transcription factor, AtMYB12, leads to insect resistance. Plant Physiol 2010; 152 (04) 2258-2268
    CrossrefPubMedSearch in Google Scholar
  • 6 Guo WL, Chen BH, Chen XJ. , et al. Transcriptome profiling of pumpkin (Cucurbita moschata Duch.) leaves infected with powdery mildew. PLoS One 2018; 13 (01) e0190175
    CrossrefPubMedSearch in Google Scholar
  • 7 Hou L, Zhang X, Li X. , et al. Mapping of powdery mildew resistance gene pmCH89 in a putative wheat-Thinopyrum intermedium introgression line. Int J Mol Sci 2015; 16 (08) 17231-17244
    CrossrefPubMedSearch in Google Scholar
  • 8 Zhang H, Yang Y, Wang C. , et al. Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew. BMC Genomics 2014; 15: 898-913
    CrossrefPubMedSearch in Google Scholar
  • 9 Yu Y, Wan Y, Jiao Z. , et al. Functional characterization of resistance to powdery mildew of VvTIFY9 from Vitis vinifera . Int J Mol Sci 2019; 20 (17) 4286-4297
    CrossrefPubMedSearch in Google Scholar
  • 10 Zhu H, Zhou YY, Zhai H. Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato. J Integr Agric 2019; 18 (01) 9-23
    CrossrefSearch in Google Scholar
  • 11 Yang Y, Wang Y, Jia L. , et al. Involvement of an ABI-like protein and a Ca2+-ATPase in drought tolerance as revealed by transcript profiling of a sweetpotato somatic hybrid and its parents Ipomoea batatas (L.) Lam. and I. triloba L. PLoS One 2018; 13 (02) e0193193
    CrossrefPubMedSearch in Google Scholar
  • 12 Chen G, Wang YY, Wang XL. , et al. Leaf epidermis transcriptome reveals drought-Induced hormonal signaling for stomatal regulation in wild barley. Plant Growth Regul 2018; 87 (01) 39-54
    CrossrefSearch in Google Scholar
  • 13 Kumar M, Chauhan AS, Kumar M. , et al. Transcriptome sequencing of Chickpea (Cicer arietinum L.) genotypes for identification of drought-responsive genes under drought stress condition. Plant Mol Biol Report 2019; 37: 186-203
    CrossrefSearch in Google Scholar
  • 14 Park S-C, Kim HS, Lee H-U. , et al. Overexpression of Arabidopsis YUCCA6 enhances environment stress tolerance and inhibits storage root formation in sweetpotato. Plant Biotechnol Rep 2019; 13: 345-352
    CrossrefSearch in Google Scholar
  • 15 Kumar J, Gunapati S, Kianian SF, Singh SP. Comparative analysis of transcriptome in two wheat genotypes with contrasting levels of drought tolerance. Protoplasma 2018; 255 (05) 1487-1504
    CrossrefPubMedSearch in Google Scholar
  • 16 Cheng Z, Lei N, Li S, Liao W, Shen J, Peng M. The regulatory effects of MeTCP4 on cold stress tolerance in Arabidopsis thaliana: a transcriptome analysis. Plant Physiol Biochem 2019; 138: 9-16
    CrossrefPubMedSearch in Google Scholar
  • 17 Aguayo P, Lagos C, Conejera D. , et al. Transcriptome-wide identification of WRKY family genes and their expression under cold acclimation in Eucalyptus globulus . Trees (Berl) 2019; 33: 1313-1327
    CrossrefSearch in Google Scholar
  • 18 Guo ZH, Liu CX, Xiao WM. , et al. Comparative transcriptome profile analysis of anther development in reproductive stage of rice in cold region under cold stress. Plant Mol Biol Report 2019; 37 (03) 129-145
    CrossrefSearch in Google Scholar
  • 19 Wang P, Su L, Gao H. , et al. Genome-wide characterization of bHLH genes in grape and analysis of their potential relevance to abiotic stress tolerance and secondary metabolite biosynthesis. Front Plant Sci 2018; 9: 64
    CrossrefPubMedSearch in Google Scholar
  • 20 Lu JX, Bi HT, Zhang AH. , et al. Comparative transcriptome analysis by RNA-Seq of the regulation of low temperature responses in Dendranthema morifolium . Hortic Environ Biotechnol 2018; 59 (03) 383-395
    CrossrefSearch in Google Scholar
  • 21 Hwang JE, Kim YJ, Jeong DY. , et al. Transcriptome analysis of Korean fir (Abies koreana) in response to elevated carbon dioxide and high temperature. Plant Biotechnol Rep 2019; 13: 603-612
    CrossrefSearch in Google Scholar
  • 22 Wang M, Zhang X, Li Q, Chen X, Li X. Comparative transcriptome analysis to elucidate the enhanced thermotolerance of tea plants (Camellia sinensis) treated with exogenous calcium. Planta 2019; 249 (03) 775-786
    CrossrefPubMedSearch in Google Scholar
  • 23 Thakur S, Choudhary S, Bhardwaj P. Comparative transcriptome profiling under Cadmium stress reveals the uptake and tolerance mechanism in Brassica juncea . J Plant Growth Regul 2019; 38 (03) 1141-1152
    CrossrefSearch in Google Scholar
  • 24 Wan J, Wang R, Wang R, Ju Q, Wang Y, Xu J. Comparative physiological and transcriptomic analyses reveal the toxic effects of ZnO nanoparticles on plant growth. Environ Sci Technol 2019; 53 (08) 4235-4244
    CrossrefPubMedSearch in Google Scholar
  • 25 Chen K, Song M, Guo Y. , et al. MdMYB46 could enhance salt and osmotic stress tolerance in apple by directly activating stress-responsive signals. Plant Biotechnol J 2019; 17 (12) 2341-2355
    CrossrefPubMedSearch in Google Scholar
  • 26 Wang M, Wang Y, Zhang Y. , et al. Comparative transcriptome analysis of salt-sensitive and salt-tolerant maize reveals potential mechanisms to enhance salt resistance. Genes Genomics 2019; 41 (07) 781-801
    CrossrefPubMedSearch in Google Scholar
  • 27 Li J, Gao Z, Zhou L. , et al. Comparative transcriptome analysis reveals K+ transporter gene contributing to salt tolerance in eggplant. BMC Plant Biol 2019; 19 (01) 67-85
    CrossrefPubMedSearch in Google Scholar
  • 28 Zhou J, Huang J, Tian XY. , et al. Transcriptome analysis reveals dynamic changes in the salt stress response in Salix . J For Res 2018; (e-pub ahead of print).
    CrossrefSearch in Google Scholar
  • 29 Li PF, Cai J, Luo X. , et al. Transformation of wheat Triticum aestivum with the HvBADH1 transgene from hulless barley improves salinity-stress tolerance. Acta Physiol Plant 2018; 41: 155-169
    Search in Google Scholar
  • 30 Nawaz G, Kang H. Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation. BMC Plant Biol 2019; 19 (01) 17-28
    CrossrefPubMedSearch in Google Scholar
  • 31 Chandran AKN, Kim J-W, Yoo Y-H. , et al. Transcriptome analysis of rice-seedling roots under soil-salt stress using RNA-Seq method. Plant Biotechnol Rep 2019; 13: 567-578
    CrossrefSearch in Google Scholar
  • 32 Kusunoki K, Kobayashi Y, Kobayashi Y. , et al. Comparative characterization of aluminum responsive transcriptome in Arabidopsis roots: comparison with other rhizotoxic ions at different stress intensities. Soil Science and Plant Nutrition. Soil Sci Plant Nutr 2018; 64 (04) 1-13
    CrossrefSearch in Google Scholar
  • 33 Zhu X, Li X, Jiu S, Zhang K, Wang C, Fang J. Analysis of the regulation networks in grapevine reveals response to waterlogging stress and candidate gene-marker selection for damage severity. R Soc Open Sci 2018; 5 (06) 172253
    CrossrefPubMedSearch in Google Scholar
  • 34 Zhu M, Meng X, Cai J, Li G, Dong T, Li Z. Basic leucine zipper transcription factor SlbZIP1 mediates salt and drought stress tolerance in tomato. BMC Plant Biol 2018; 18 (01) 83-97
    CrossrefPubMedSearch in Google Scholar