1 F
|
2q37.3 deletion syndrome, mosaic
|
arr[GRCh37] 2q37.3(239195948_243068396) × 1[0.47] dn
|
Gross motor, speech, cognition
|
Prominent parietooccipital regions, downward slanting palpebral fissures, epicanthus, poorly defined helix, and otapostasis
|
Hypotonia
|
Standard
|
Not performed
|
2 M
|
2q37.3 deletion syndrome
|
arr[GRCh37] 2q37.3(241110554_243007359) × 1 mat
|
Gross motor, speech
|
Hypertelorism, macrocephaly
|
|
Standard and specific
|
CT scan: normal
|
3 F
|
4q13.1q13.3 deletion, includes ANKRD17; pathogenic
|
arr[GRCh37] 4q13.1q13.3(64160111_75772429) × 1
|
All domains
|
Frontal bossing, smaller chin, short stature
|
Coloboma of an iris and a retina
|
Standard
|
MRI: a hypoplastic corpus callosum, enlarged lateral ventricles, reduced size of a pituitary gland and oliguria
|
4 F
|
Sotos syndrome (OMIM: 117550) due to the deletion in 5q35 that includes NSD1 gene
|
arr[GRCh37] 5q35.2(175740461_175996710) × 3, 5q35.2q35.3(176235002_177047120) × 1
|
Fine and gross motor, speech, cognition
|
Dolichocephaly, a triangular face, macrocephaly, frontal bossing, a high hairline, hypertelorism, a high arched palate, a saddle nose, low-set ears, macrosomia
|
|
Standard
|
MRI: a hypoplastic corpus callosum
|
5 M
|
Coffin–Siris syndrome (OMIM: 135900) due to the intragenic ARID1B deletion
|
arr[GRCh37] 6q25.3(157159360_157423012) × 1
|
All domains
|
A high arched palate
|
|
Standard and specific
|
MRI: normal (minor cysts of the choroid plexus and an arachnoid cyst)
|
6 M
|
Intellectual developmental disorder, autosomal dominant 26 (OMIM: 615834) due to the intragenic AUTS2 deletion
|
arr[GRCh37] 7q11.22(69583363_69661867) × 1
|
Gross motor, speech
|
Macrocephaly, a saddle nose, low-set ears, microretrognathia
|
Hypotonia
|
Standard
|
MRI: cavum septum pellucidum cyst, cavum verge. Hypomyelinated deep white matter in the frontal and parietal regions
|
7 M
|
Intellectual developmental disorder, autosomal dominant 26 (OMIM: 615834) due to the intragenic AUTS2 deletion
|
arr[GRCh37] 7q11.22(70132824_70274344) × 1
|
Fine and gross motor, speech
|
Micro- and brachycephaly, downward slanting palpebral fissures
|
Generalized hypotonia, feeding problems
|
Standard and specific
|
Not performed
|
8 M
|
8p23.1 deletion syndrome
|
arr[GRCh37] 8p23.1(8866317_10995452) × 1
|
All domains
|
A high arched palate, slightly small, low-set ears
|
|
Standard and specific
|
MRI: mild white matter hyperintensities. Mild epidural lipomatosis of the thoracic segments of the spinal canal
|
9 M
|
Terminal 8p23.3 deletion
|
arr[GRCh37] 8p23.3(194617_2132396) × 1
|
Speech, cognition
|
A wide nasal bridge
|
|
Standard
|
MRI: hippocampal malrotation, mild hypoplasia of the corpus callosum
|
10 M
|
8p23.1 duplication syndrome (ORPHA251076)
|
arr[GRCh37] 8p23.1(8130630_12404062) × 3
|
Gross motor, speech, cognition, social
|
Macrocrania, frontal bossing, a tented mouth
|
|
Standard and specific
|
MRI: enlarged anterior horns of the lateral ventricles, enlarged subarachnoid space in the frontal and frontotemporal region. Moderate dilatation of the third and fourth ventricle, aqueduct and cisterna magna—chronic hydrocephalus susp.
|
11 M
|
9q34 duplication syndrome
|
arr[GRCh37] 9q34.13q34.2(134987671_137180592) × 3
|
Gross motor, speech
|
Dolichocephaly, low set and protruding ears, a saddle nose, a tented mouth, short stature
|
|
Standard.
|
Not performed
|
12 M
|
Lamb–Shaffer syndrome (OMIM: 616803) due to intragenic SOX5 deletion
|
arr[GRCh37] 12p12.1(23817962_23853157) × 1
|
Gross motor, speech, cognition, social
|
None
|
|
Standard.
|
Not performed
|
13 M
|
KDM5A genopathy (El Hayek–Chahrour neurodevelopmental syndrome)
|
arr[GRCh37] 12p13.33(311657_1456832) × 1 AND KDM5A(NM_001042603.3:c.1942C > T) pathogenic variant
|
Gross motor, speech
|
Nonspecified dysmorphic signs
|
Generalized hypotonia, joints hypermobility
|
Standard
|
MRI: hypoplastic corpus callosum, signs of mild periventricular leukomalacia (PVL)
|
14 F
|
Lamb–Shaffer syndrome (OMIM: 616803) due to partial SOX5 tandem duplication
|
arr[GRCh37] 12p12.1(23756985_23948831) × 3
|
Gross motor, speech, cognition
|
None
|
|
Standard and specific
|
MRI: mild hyperintensity of the parietal deep white matter
|
15 F
|
Interstitial 4q12q13.3 deletion
|
arr[GRCh37] 4q12q13.3(59167158_72771891) × 1
|
Gross motor, speech
|
None
|
Bilateral hip dysplasia, hypotonia, joints hypermobility
|
Standard
|
Not performed
|
16 F
|
15q11.2 microdeletion (OMIM: 615656)
|
arr[GRCh37] 15q11.2(22842145_23091180) × 1
|
Speech, fine and gross motor
|
None
|
|
Standard
|
Not performed
|
17 M
|
15q11.2 microdeletion (OMIM: 615656)
|
arr[GRCh37] 15q11.2(22842145_23091180) × 1
|
Gross motor, speech
|
None
|
|
Standard
|
MRI: mild abnormalities
|
18 M
|
Interstitial 16q11.2q12.1 deletion
|
arr[GRCh37] 16q11.2q12.1(46500741_51492021) × 1
|
Gross motor, speech
|
Low-set ears, a pendant in front of right ear, elongated philtrum and a thin upper lip, micrognathia, anteriorly displaced anus, incomplete prepuce, microcephaly
|
|
Not performed
|
Not performed
|
19 M
|
16p11.2 microdeletion syndrome (OMIM: 611913)
|
arr[GRCh37] 16p11.2(29678569_30197341) × 1
|
Speech, cognition
|
Hypertelorism and downward slanting palpebral fissures, a triangular face
|
Congenital hypotonia
|
Standard
|
MRI: normal
|
20 F
|
16p11.2 microdeletion syndrome (OMIM: 611913)
|
arr[GRCh37] 16p11.2(29678569_30197341) × 1
|
Gross and fine motor, speech, cognition
|
Narrow, triangular face, thin lips
|
Hypotonia
|
Standard
|
MRI: normal
|
21 F
|
16p13.11 microdeletion syndrome (additional VUS of intragenic IL1RAPL1 gene duplication) (OMIM: 300143)
|
arr[GRCh37] 16p13.11(15126709_16292235) × 1,Xp21.2(29413516_29417617) × 3
|
Speech, cognition
|
None
|
|
Standard and specific
|
MRI: mildly altered T1-signal in the globus pallidus and thalamus—metabolic cause? Pineal cyst—incidental finding
|
22 F
|
Interstitial 16q23.2q23.3 deletion
|
arr[GRCh37] 16q23.2q23.3(81058295_83819748) × 1
|
Fine motor, speech
|
None
|
Epilepsy (first abnormal EEG at the age of 4.5 years), ADHD syndrome, autism susp.
|
Standard
|
MRI: normal
|
23 M
|
Interstitial 16q23.1q24.1 deletion
|
arr[GRCh37] 16q23.1q24.1(79015710_84438495) × 1
|
Gross motor, speech
|
Brachycephaly, wide nasal bridge, hypertelorism, low-set ears, microretrognathia
|
|
Standard and specific
|
MRI: hypoplastic corpus callosum in the posterior part of the trunk and the splenium, mild enlargement of the suprasellar cistern and hypoplastic optic chiasm
|
24 M
|
Smith–Magenis syndrome (OMIM: 182290)
|
arr[GRCh37] 17p11.2(16637902_20294038) × 1
|
All domains
|
Facies adenoid, open bite, wide nasal bridge, short toes
|
Generalized hypotonia
|
Standard
|
Not performed
|
25 M
|
Phelan–McDermid syndrome (OMIM: 606232)
|
arr[GRCh37] 22q13.2q13.33(43506447_51178264) × 1
|
All domains
|
Mild macrocephaly, prominent nose septum, large, protruding, and low-set ears, tented mouth, micrognathia, Pierre Robin sequence
|
Bilateral congenital hydronephrosis, atrial septal defect, bicuspid aortic valve, persistent left superior vena cava
|
Not performed
|
Not performed
|
26 M
|
FraX syndrome (OMIM: 300624)
|
>200 CGG repeats in FMR1 gene (pathogenic variant)
|
Speech, fine and gross motor, social
|
Macrosomia, macrocrania
|
|
Standard and specific
|
Not performed
|
27 F
|
Xq22.2q22.3 deletion, including PLP1 gene (OMIM: 312080)
|
arr[GRCh37] Xq22.2q22.3(102659225_104348122) × 1
|
Gross motor, speech
|
Wide mouth, short philtrum, large tongue, short thumbs
|
|
Standard
|
MRI: PVL
|
28 M
|
Intellectual developmental disorder, autosomal dominant 39 (OMIM: 616521)
|
MYT1L (NM_001303052.2: c.1573C > T) likely pathogenic variant (aCGH normal)
|
Fine and gross motor, speech
|
None
|
Joint hypermobility
|
Standard
|
MRI: abnormal
|
29 F
|
Xia Gibbs syndrome (OMIM: 615829)
|
AHDC1 (NM_001029882.3:c.943C > T) pathogenic variant (aCGH normal)
|
Gross motor, speech, cognition, social
|
Frontal bossing, hypomimia
|
|
Standard
|
MRI: moderate ventriculomegaly, hypoplastic corpus callosum, reduced volume of the upper part of the vermis and the medial parts of the cerebellar hemispheres
|
30 F
|
Intellectual developmental disorder, autosomal dominant 26 (OMIM: 615834)
|
AUTS2 (NM_015570.4:c.1603_1626del) pathogenic variant (aCGH normal)
|
All domains
|
High arched palate, sunken eyes, frontal bossing, slightly shorter corpus and ramus of mandibulae, pronounced nasal tip, asymmetrical face, pointed fifth finger on both hands
|
|
Standard and specific
|
MRI: periventricular white matter hyperintensity—neurodegenerative disorder? Less likely periventricular leukomalacia.
Follow-up MRI showed no signs of a progressive disease
|
31 F
|
Rett syndrome (OMIM: 312750)
|
MECP2 (NM_004992.3:c.377 + 1G > T) pathogenic variant (aCGH normal)
|
Fine and gross motor, speech, cognition
|
None
|
Stereotyped behavior
|
Standard
|
Not performed
|
32 F
|
SBBYSS syndrome (OMIM: 603736)
|
KAT6B (NM_001370136.1:c.3022–1G > A) pathogenic variant (aCGH normal)
|
Gross motor, speech
|
Hypertelorism, epicanthus, frontal bossing
|
|
Not performed
|
Cranial ultrasound: slightly enlarged lateral ventricles
|
33 F
|
Rett syndrome (OMIM: 312750)
|
MECP2 (NM_004992.3:c.316C > T) likely pathogenic variant (aCGH normal)
|
All domains
|
Microcephaly
|
Epilepsy (first abnormal EEG at the age of 3 years), generalized hypotonia, extrapyramidal signs
|
Standard and specific
|
MRI: global cerebral atrophy, more pronounced in the frontotemporal region
|
34 M
|
Alpha-thalassemia/mental retardation syndrome, X-linked 1 (OMIM:301040)
|
ATRX (NM_000489.5:c.6254G > A) pathogenic variant (aCGH normal)
|
All domains
|
Hypertelorism, frontal bossing, clinodactyly
|
|
Standard and specific
|
Not performed
|
35 M
|
Hypomyelinating leukodystrophy type 14 (OMIM: 617899)
|
UFM1 (NM_001286704.2: c.170_171 + 1delAAG – class 4 AND c.278G > A – class 3P) (aCGH normal)
|
Fine and gross motor, speech, cognition
|
None
|
|
Standard and specific
|
MRI: abnormal
|
36 F
|
Intellectual developmental disorder, X-linked syndromic, Snijders Blok type (OMIM: 300958)
|
DDX3X (NM_001356.3:c.643A > T) pathogenic variant (aCGH – likely benign maternally inherited deletion (arr[GRCh37] 1q31.2(191923093_192268476) × 1)
|
Gross and fine motor, speech
|
None
|
|
Standard
|
MRI: normal
|
37 M
|
Mental retardation, autosomal dominant, 56 (OMIM: 617854)
|
CLTC (NM_001288653.1:c.3763C > T) pathogenic variant (aCGH – likely benign maternally inherited duplication (arr[GRCh37] 5q11.1q11.2(50288877_50840847) × 3)
|
Gross and fine motor, speech, cognition
|
Epicanthus, a wide nasal bridge, tented mouth
|
|
Standard
|
MRI: normal
|
38 F
|
PDX1 deficiency (OMIM: 608769)
|
PDHX (NM_003477.3):c.1204G > T) homozygous likely pathogenic variant
|
Gross motor, speech
|
Decreased facial expression, high arched palate
|
Hypotonia, hand stereotypies
|
Standard and specific
|
MRI: Mild to moderate ventriculomegaly
|
39 F
|
Mental retardation, autosomal dominant, 57 (OMIM: 618050)
|
TLK2 (NM_001284333.2:c.1339G > A) likely pathogenic variant (aCGH normal)
|
Gross motor, speech
|
Hypertelorism, epicanthus, low set, protruding ears, short fingers (especially, the thumb), polydactyly, a high forehead, a small mouth, and chin
|
|
Standard
|
MRI: MRI changes consistent with a mild perinatal hypoxia.
Atypical hippocampal development, no signs of metabolic disease
|
40 F
|
UNC80 deficiency (OMIM: 616801)
|
UNC80–compound heterozygous for 2 pathogenic variants (NM_001371986.1:c.1696C > T and NM_001371986.1:c.5371delC) (aCGH normal)
|
All domains
|
A tented mouth
|
Generalized hypotonia, auto-aggressive behavior
|
Standard and specific
|
MRI: normal
|
41 M
|
Intellectual developmental disorder, autosomal dominant 5 (OMIM: 612621)
|
SYNGAP1 (NM_006772.3:c.3219delT) pathogenic variant (aCGH normal)
|
Speech, gross motor, cognition
|
Frontal bossing, a wide nasal bridge, low-set ears, small chin. Limbs: overlapping toes of the right foot, bilateral sandal gap
|
|
Not performed
|
Not performed
|
42 M
|
Kleefstra syndrome (OMIM: 610253)
|
EHMT1 (NM_024757.5:c.1588C > T) pathogenic variant (aCGH normal)
|
Fine and gross motor, speech, cognition
|
Hypertelorism, bluish sclerae, facies adenoid, thicker and hard blond hair, a large tongue
|
Generalized hypotonia, joints hypermobility
|
Standard and specific
|
MRI: white matter atrophy in periventricular region suggestive of a moderate PVL. Hypoplastic mesencephalon and pons
|
43 F
|
Neurodevelopmental disorder with poor language and loss of hand skills (OMIM: 617903)
|
GABBR2 (NM_005458.8:c.1699G > A) pathogenic variant (aCGH normal)
|
Gross motor, speech
|
None
|
|
Standard and specific
|
MRI: normal
|
44 M
|
Pitt–Hopkins syndrome (OMIM: 610954)
|
TCF4 (NM_001243226.2:c.806–1G > A) pathogenic variant
|
All domains
|
Poorly defined ear helixes, a tented mouth
|
|
Standard and specific
|
MRI: mild PVL susp.
|
45 F
|
Developmental and epileptic encephalopathy 42 (OMIM: 617106)
|
CACNA1A (NM_023035.2:c.5006G > A) pathogenic variant
|
Gross motor, speech, cognition
|
None
|
|
Standard
|
MRI: Hypoplastic vermis and dorsal part of the pons, mildly enlarged fourth ventricle and cisterna magna
|
46 F
|
Glass syndrome (OMIM: 612313)
|
SATB2 (NM_001172509.2:c.823C > T) likely pathogenic variant (aCGH normal)
|
Gross and fine motor, speech, cognition
|
A cleft palate
|
Mild to moderate sensorineural hearing loss
|
Standard
|
Cranial ultrasound: no significant changes
|
47M
|
Sotos syndrome (OMIM:117550)
|
NSD1 (NM_022455.5):c.4497 + 2T > C) pathogenic variant (aCGH normal)
|
Gross motor, speech, cognition, social
|
Macrosomia, macrocephaly, downward slanting palpebral fissures, tented mouth, high arched palate
|
|
Standard
|
MRI: hypomyelinated WM. Mildly enlarged lateral ventricles. A hypoplastic corpus callosum. Persistent cavum septum pellucidum and cavum verge
|
48 F
|
Intellectual developmental disorder with dysmorphic facies, speech delay, and T cell abnormalities (OMIM: 618092)
|
BCL11B (NM_138576.4:c.2014_2023dupA) likely pathogenic variant (aCGH normal)
|
Fine motor, speech, cognition, social
|
Microcephaly, retrognathia, small ears
|
|
Standard
|
MRI: abnormal gyration in the temporal lobes and thicker cortex
|
49 F
|
Intellectual developmental disorder, autosomal dominant 5 (OMIM: 612621)
|
SYNGAP1 (NM_006772.2:c.3200delC) pathogenic variant (aCGH – likely benign maternally inherited duplication (arr[GRCh37] 13q34(114843912_115067041) × 3)
|
Gross motor, speech, cognition
|
Hypertelorism
|
Epilepsy (first pathologic EEG at the age of 2 years)
|
Standard and specific
|
MRI: slight asymmetry of the cerebral hemispheres with mild enlargement of the left cerebral hemisphere and the left lateral ventricle—variant? Hemimegalencephaly? Thinner corpus callosum, mild enlargement of the third ventricle and fourth ventricle, cisterna magna and suprasellar cisterna -developmental?
Spectroscopy: slightly elevated lactate and slightly reduced N-acetylaspartate—metabolic disorder?
|
50 F
|
Epilepsy, progressive myoclonic, 11 (OMIM: 618876)
|
SEMA6B (NM_032108.4:c.2032G > T) likely pathogenic variant (aCGH normal)
|
All domains
|
None
|
|
Standard.
|
MRI: normal
|
51 M
|
Bainbridge–Ropers syndrome (OMIM: 615485)
|
ASXL3 (NM_030632.3:c.3364C > T) pathogenic variant
|
All domains
|
A thin upper lip, wide philtrum, flexion wrist contracture, high arched palate, and abnormality of a tongue
|
|
Standard and specific
|
MRI: dysmyelination in the parietal regions with loss of volume of the deep white matter, severely thinned corpus callosum—atrophic or hypoplastic. Moderately dilated and deformed lateral ventricles. Nonspecific changes suggestive of a metabolic or a genetic disorder
|
52 M
|
Kleefstra syndrome (OMIM: 610253)
|
EHMT1 (NM_024757.4:c.736C > T) likely pathogenic variant (aCGH normal)
|
Fine and gross motor, speech
|
A wide nasal bridge, epicanthus, hypertelorism, frontal bossing, midface hypoplasia
|
|
Standard
|
Not performed
|
53 M
|
Coffin-Siris syndrome-6 (OMIM: 617808)
|
ARID2 (NM_152641.4:c.4640_4659delC) pathogenic variant (aCGH normal)
|
Gross motor, speech
|
Frontal bossing, saddle nose, hypoplastic teeth, enlarge anterior fontanelle at the age of 22 mo
|
Strabismus and nystagmus
|
Standard and specific
|
MRI: normal
|
54 M
|
SAS syndrome (OMIM: 612313)
|
SATB2 (NM_001172509.2:c.738T > A) likely pathogenic variant (aCGH normal)
|
Gross and fine motor, speech
|
Cleft palate
|
|
Standard
|
Not performed
|
55 F
|
Cowden syndrome (OMIM: 601728)
|
PTEN (NM_001304717.5:c.728 + 2T > C) pathogenic variant (aCGH normal)
|
Gross motor, speech
|
Macrocephaly, hypomimia, facies adenoid
|
Generalized hypotonia, joints hypermobility.
Vascular malformation of the capillary-venous type on the upper limb, bilateral ptosis
|
Standard
|
Not performed
|
56 M
|
GAND syndrome (OMIM: 615074)
|
GATAD2B (NM_020699.4:c.387dup) likely pathogenic variant (aCGH normal)
|
Gross motor, speech
|
Macrocephaly
|
|
Standard and specific
|
MRI: delayed myelination and hypomyelination in the deep white matter. Mild reduction of the white matter volume supratentorial, with mild ventricles and the subarachnoid space enlargement. Enlarged aqueduct. Ventriculomegaly due to atrophy or moderate chronic communicant hydrocephalus
|
57 M
|
Jacobs syndrome
|
Karyotype analysis 47,XYY
|
Gross motor, speech
|
High stature
|
Joints hypermobility, convergent strabismus, motor tics, developmental coordination disorder
|
Standard and specific
|
Not performed
|
58 M
|
13q terminal deletion syndrome
|
Terminal deletion with final karyotype 46,XY,del(13)(q31)
|
Gross motor, speech
|
Microcephaly, saddle nose, epicanthus, low-set ears, short neck, hypotelorism, high arched palate, small penis, short perineum, poorly formed anal sphincter, cryptorchidism, short stature
|
|
Not performed
|
MRI: mild diffuse brain atrophy, alobar holoprosencephaly, atretic parietal encephalocele, mild hypoplastic vermis with incomplete rotation—Dandy–Walker malformation
|