Experimental Section
Chemistry
All the reagents and solvents were commercially available with analytical reagents.
The reaction processes were monitored by thin-layer chromatography (TLC) under a 254-nm
UV lamp on a silica gel plate GF254 (Qingdao Haiyang Chemical, Qingdao, China). Nuclear
magnetic resonance spectra (1H NMR and 13C NMR) were recorded on a Bruker Avance spectrometer (Bruker, Germany) using dimethyl
sulfoxide-d
6 (DMSO-d
6) as a solvent. Chemical shifts were reported in parts per million (ppm, δ) with tetramethylsilane
as an internal standard. ESI-MS data were recorded on an Agilent 6210 MS spectrometer.
Melting point (mp) was obtained on a WRS-2A microcomputer melting point meter (Shanghai
INESA Physico-Optical Instrument Co., Ltd., Shanghai, China).
Synthesis of IM-4
Chloroacetyl chloride (0.25 mol, 1.25 equiv.) and triethylamine (0.4 mol, 2.0 equiv.)
were dissolved in 80 mL acetonitrile. Aniline (0.2 mol, 1.0 equiv.) was slowly added
at 0 to 15°C. After the completion of the reaction monitored by TLC, the mixture was
concentrated to give a residue, followed by recrystallization and purification to
obtain IM-2 (18.4 g, 51%) as a white solid. ESI-MS (m/z) calcd for C9H11ClNO+[M + H]+, 184.0521; found 184.64. To a solution of 4-Boc-aminopiperidine (0.1 mol, 1.0 equiv.)
in acetonitrile (40 mL) IM-2 (0.1 mol, 1.0 equiv.), K2CO3 (0.2 mol, 2.0 equiv.), and KI (5 mmol, 0.05 equiv.) were successively added at room
temperature. The mixture was heated to 40°C. After the completion of the reaction
monitored by TLC, the mixture was filtered. The filtrate was concentrated. The crude
product was washed with ether to get IM-3 (32.5 g, 93.6%), which was dissolved in ethyl acetate (80 mL). HCl/ethyl acetate
solution was added to adjust pH to 3 to 4. After stirring for 1 hour, a large amount
of solid was precipitated and filtered to obtain the product IM-4 (27.9 g, 93.1%) as a white solid.
Synthesis of A1–A13
The arylamines (1a–1j, 5.0 mmol, 1.0 equiv.) and pyridine (8.75 mmol, 1.75 equiv.) were dissolved in N,N-dimethylformamide (DMF, 30 mL), then phenyl chloroformate (6.4 mmol, 1.28 equiv.)
was slowly added at 0 to 5°C. After the completion of the reaction monitored by TLC,
ice water (50 mL) was poured into the reaction solution to precipitate a white solid,
which was filtered and washed with ether to yield 2a–2j.
Pyridine (2 drops) was added to a solution of IM-4 (2.26 mmol, 1.0 equiv.) in DMF (20 mL). The suspension was stirred at room temperature
for 1.5 hours, and then heated to reflux. After the completion of the reaction monitored
by TLC, the mixture was cooled down and concentrated to give a residue, with pH being
adjusted to 9 to 10 with a saturated sodium bicarbonate solution. The solution was
extracted with dichloromethane (20 mL × 2). The combined organic layer was dried over
anhydrous Na2SO4, filtered, and concentrated to yield 3a–3j as a yellow solid.
Arylamine (1k–1m, 5.0 mmol, 1.0 equiv.) and CDI (6.0 mmol, 1.2 equiv.) were dissolved in an appropriate
amount of DMF and stirred for 2 hours. The active intermediate was obtained, then
IM-4 (5.0 mmol, 1.0 equiv.) and triethylamine (15.0 mmol, 3.0 equiv.) were added. The
mixture was stirred at room temperature overnight. After the completion of the reaction
monitored by TLC, water was added. The mixture was extracted with ethyl acetate. The
combined organic layer was washed with saturated sodium bicarbonate solution, dried
over anhydrous Na2SO4, filtered, and concentrated to give a residue (yellow oil), followed by recrystallization
with MeOH to yield intermediates 2k–2m as a white or pale yellow powder.
A1–A13 were salted from 3a–3j and 2k–2m using an HCl/ethyl acetate solution and obtained according to the method described
for IM-4.
N-Benzyl-2-(4-(3-phenylureido)piperidin-1-yl)acetamide hydrochloride (A1): yield: 59.3%. mp: 80.2–82.2°C. ESI-MS (m/z): calcd for C21H27N4O2
+ [M + H]+ 367.2129; found 367.24. 1H NMR (400 MHz, DMSO-d
6) δ 9.94 (s, 1H), 9.24-9.18 (m, 1H), 7.58 (s, 3H), 7.37-7.26 (m, 5H), 6.88 (t, J = 8.0 Hz, 1H), 6.79 (d, J = 4.0 Hz, 1H), 4.37 (d, J = 8.0 Hz, 2H), 4.05-3.98 (m, 2H), 3.74-3.67 (m, 1H), 3.49 (d, J = 8.0 Hz, 2H), 3.17 (q, J = 8.0 Hz, 1H), 2.09-1.99 (m, 2H), 1.91 (s, 1H), 1.83-1.70 (m, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 172.12, 156.87, 139.61, 139.18, 130.02, 129.58, 128.07, 127.84, 123.53, 119.61,
63.31, 50.91, 46.66, 45.26, 34.37.
N-Benzyl-2-(4-(3-(4-(trifluoromethyl)phenyl)ureido)piperidin-1-yl)acetamide hydrochloride
(A2): yield: 55.4%. mp: 117.6–118.8°C. ESI-MS (m/z) calcd for C22H26F3N4O2
+ [M + H]+ 435.2002; found 435.21. 1H NMR (400 MHz, DMSO-d
6) δ 9.83 (s, 1H), 9.24-9.19 (m, 1H), 8.92 (s, 1H), 7.40-7.25 (m, 7H), 7.05 (t, J = 8.0 Hz, 2H), 4.36 (d, J = 4.0 Hz, 2H), 4.06-3.98 (m, 2H), 3.72-3.65 (m, 1H), 3.48 (d, J = 12.0 Hz, 2H), 3.22-3.14 (m, 1H), 2.09-1.99 (m, 2H), 1.91 (s, 1H), 1.79-1.68 (m,
2H); 13C NMR (151 MHz, DMSO-d
6) δ 171.12, 157.09, 141.59, 139.31, 128.50, 127.70, 127.64, 126.08, 125.24, 123.90,
119.23, 60.31, 51.61, 46.76, 43.76, 31.10.
N-Benzyl-2-(4-(3-(4-fluorophenyl)ureido)piperidin-1-yl)acetamide hydrochloride (A3): yield: 67.0%. mp: 74.8–75.5°C. ESI-MS (m/z) calcd for C21H26FN4O2
+ [M + H]+ 385.2034; found 385.19. 1H NMR (400 MHz, DMSO-d
6) δ 7.38-7.25 (m, 7H), 7.21 (t, J = 8.0 Hz, 2H), 6.88 (t, J = 8.0 Hz, 1H), 4.36 (d, J = 4.0 Hz, 2H), 4.05-4.02 (m, 1H), 3.98 (d, J = 4.0 Hz, 2H), 3.49 (d, J = 12.0 Hz, 2H), 3.39 (s, 1H), 3.18 (q, J = 12.0 Hz, 1H), 2.04-1.99 (m, 2H), 1.79-1.69 (m, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 172.02, 164.06, 154.84, 138.43, 136.87, 128.42, 127.43, 127.11, 118.96, 115.03,
56.27, 51.72, 44.02, 42.25, 29.16
N-Benzyl-2-(4-(3-(4-methoxyphenyl)ureido)piperidin-1-yl)acetamide hydrochloride (A4): yield: 65.1%. mp: 74.8–75.5°C. ESI-MS (m/z) calcd for C22H29N4O3
+ [M + H]+, 397.2234; found 397.21. 1H NMR (400 MHz, DMSO-d
6) δ 9.94 (s, 1H), 9.24-9.18 (m, 1H), 8.81 (d, J = 28.0 Hz, 1H), 8.56 (s, 1H), 7.37-7.26 (m, 7H), 6.86-6.79 (m, 2H), 4.36 (d, J = 4.0 Hz, 2H), 4.05-3.98 (m, 2H), 3.70 (d, J = 8.0 Hz, 4H), 3.50-3.39 (m, 3H), 3.17 (q, J = 12.0 Hz, 1H), 2.03-1.99 (m, 2H), 1.78-1.65 (m, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 164.06, 154.96, 153.89, 138.42, 133.22, 128.42, 127.44, 127.12, 119.55, 113.96,
56.27, 55.14, 51.76, 48.45, 44.03, 29.23.
N-Benzyl-2-(4-(3-cyclohexylureido)piperidin-1-yl)acetamide hydrochloride (A5): yield: 67.9%. mp: 87.3–88.5°C. ESI-MS (m/z) calcd for C21H33N4O2
+ [M + H]+ 373.2598; found 373.28. 1H NMR (400 MHz, DMSO-d
6) δ 9.97 (s, 1H), 9.24 (d, J = 8.0 Hz, 1H), 7.36-7.25 (m, 5H), 4.35 (d, J = 8.0 Hz, 3H), 4.05-3.98 (m, 3H), 3.63-3.53 (m, 1H), 3.47-3.41 (m, 2H), 3.40-3.34
(m, 3H), 3.30-3.26 (m, 1H), 3.14 (q, J = 12.0 Hz, 1H), 2.01-1.95 (m, 2H), 1.72-1.61 (m, 4H), 1.52-1.49 (m, 1H), 1.29-1.04
(m, 3H); 13C NMR (151 MHz, DMSO-d
6) δ 164.06, 156.74, 138.44, 128.41, 127.42, 127.09, 63.07, 56.23, 51.79, 44.06, 42.23,
33.22, 29.42, 25.31, 24.39.
N-Benzyl-2-(4-(3-(1,3,4-thiadiazol-2-yl)ureido)piperidin-1-yl)acetamide hydrochloride
(A6): yield: 45.7%. mp: 137.6–138.7°C. ESI-MS (m/z) calcd for C17H23N6O2S+ [M + H]+ 375.1598; found 375.16. 1H NMR (400 MHz, DMSO-d
6) δ 10.58 (s, 1H), 8.97 (s, 1H), 8.26 (dt, J = 20.0 Hz, 4.0 Hz, 1H), 7.33-7.30 (m, 2H), 7.26-7.22 (m, 3H), 6.82 (s, 1H), 4.30
(t, J = 8.0 Hz, 2H), 3.51 (s, 1H), 2.98-2.94 (m, 2H), 2.75-2.67 (m, 2H), 2.19 (dt, J = 28.0 Hz, 8.0 Hz, 2H), 1.81 (d, J = 8.0 Hz, 1H), 1.71 (d, J = 4.0 Hz, 1H), 1.51 (td, J = 12.0 Hz, 4.0 Hz, 1H), 1.35 (td, J = 8.0 Hz, 4.0 Hz, 1H); 13C NMR (151 MHz, DMSO-d
6) δ 171.12, 166.69, 158.29, 146.78, 139.31, 128.50, 127.70, 127.64, 60.31, 51.61,
46.82, 43.76, 31.08.
N-Benzyl-2-(4-(3-(5-methylthiazol-2-yl)ureido)piperidin-1-yl)acetamide hydrochloride
(A7): yield: 61.5%. mp: 142.0–144.8°C. ESI-MS (m/z) calcd for C19H26N5O2S+ [M + H]+ 388.1802; found 388.25. 1H NMR (400 MHz, DMSO-d
6) δ 9.96 (s, 1H), 8.27 (s, 1H), 7.32-7.23 (m, 5H), 6.95 (s, 1H), 6.54 (s, 1H), 4.31
(d, J = 4.0 Hz, 2H), 3.50 (s, 1H), 2.98 (s, 2H), 2.71 (s, 2H), 2.28-2.22 (m, 5H), 1.81
(d, J = 4.0 Hz, 2H), 1.47 (d, J = 4.0 Hz, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 164.03, 159.70, 152.70, 152.51, 138.45, 128.41, 127.43, 127.10, 125.22, 56.24,
51.46, 44.62, 42.23, 28.73, 11.23.
N-Benzyl-2-(4-(3-(pyridin-3-yl)ureido)piperidin-1-yl)acetamide hydrochloride (A8): yield: 55.8%. mp: 82.8–83.9°C. ESI-MS (m/z) calcd for C20H26N5O2
+ [M + H]+ 368.2081; found 368.16. 1H NMR (400 MHz, DMSO-d
6) δ 8.52 (s, 1H), 8.50 (d, J = 4.0 Hz, 1H), 8.25 (t, J = 4.0 Hz, 1H), 8.10 (dd, J = 4.0 Hz, 3.6 Hz, 1H), 7.87 (dq, J = 8.0 Hz, 4.0 Hz, 1H), 7.32-7.30 (m, 2H), 7.25-7.22 (m, 4H), 6.29 (d, J = 8.0 Hz, 1H), 4.30 (t, J = 4.0 Hz, 2H), 3.51-3.48 (m, 1H), 2.97 (s, 1H), 2.94 (d, J = 4.0 Hz, 1H), 2.75-2.71 (m, 2H), 2.21 (t, J = 4.0 Hz, 1H), 2.15 (t, J = 4.0 Hz, 1H), 1.80 (dd, J = 8.0 Hz, 4.0 Hz, 2H), 1.46 (td, J = 8.0 Hz, 4.0 Hz, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 171.12, 156.89, 144.28, 143.03, 139.31, 136.19, 128.50, 127.70, 127.64, 126.25,
125.03, 60.31, 51.61, 46.76, 43.76, 31.10.
N-Benzyl-2-(4-(3-(1H-pyrazol-3-yl)ureido)piperidin-1-yl)acetamide hydrochloride (A9): yield: 47.5%. mp: 105.9–107.4°C. ESI-MS (m/z) calcd for C18H25N6O2
+ [M + H]+ 375.2034; found 357.26. 1H NMR (400 MHz, DMSO-d
6) δ 8.22 (s, 1H, CONH), 7.88 (d, J = 4.0 Hz, 2H, CONH), 7.36-7.31 (m, 3H), 7.26-7.22 (m, 3H), 5.75 (d, J = 2.0 Hz, 1H), 5.27 (s, 2H), 4.30 (d, J = 4.0 Hz, 2H), 3.57 (t, J = 4.0 Hz, 1H), 2.98 (s, 2H), 2.78 (d, J = 8.0 Hz, 2H), 2.19 (t, J = 4.0 Hz, 2H), 1.76 (d, J = 8.0 Hz, 2H), 1.69-1.64 (m, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 164.07, 148.85, 138.50, 130.27, 128.42, 127.44, 127.40, 127.10, 100.18, 56.34,
51.67, 45.32, 42.24, 28.47.
N-Benzyl-2-(4-(3-(5-methyl-1,3,4-thiadiazol-2-yl)ureido)piperidin-1-yl)acetamide hydrochloride
(A10): yield: 56.4%. mp: >220°C. ESI-MS (m/z) calcd for C18H25N6O2S+ [M + H]+ 389.1754; found 440.20. 1H NMR (600 MHz, DMSO-d
6): δ 9.18 (s, 1H), 8.59 (s, 1H), 7.37-7.08 (m, 5H), 4.38-4.36 (d, 2H), 3.93 (s, 2H),
3.56-3.53 (m, 2H), 3.31 (m, 1H), 3.21-3.16 (m, 2H), 2.45 (s, 3H), 2.17-2.14 (m, 2H),
2.06-1.96 (m, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 172.05, 164.07, 158.31, 153.22, 138.48, 128.44, 127.46, 127.14, 56.26, 51.54,
44.60, 42.26, 28.85, 14.77.
N-Benzyl-2-(4-(3-(5-methylisoxazol-3-yl)ureido)piperidin-1-yl)acetamide hydrochloride
(A11): yield: 68.4%. mp: 206.3–208.4°C. ESI-MS (m/z) calcd for C19H26N5O3
+ [M + H]+ 372.2030; found 372.24. 1H NMR (400 MHz, DMSO-d
6) δ 9.93 (s, 1H), 9.29 (s, 1H), 9.17 (d, J = 8.0 Hz, 1H), 7.37-7.25 (m, 5H), 6.98 (d, J = 8.0 Hz, 1H), 6.40 (s, 1H), 4.36 (d, J = 8.0 Hz, 2H), 3.98 (s, 2H), 3.69 (d, J = 8.0 Hz, 1H), 3.48 (d, J = 12.0 Hz, 2H), 3.17 (q, J = 8.0 Hz, 2H), 2.32 (s, 3H), 2.02 (d, J = 12.0 Hz, 2H), 1.76 (t, J = 8.0 Hz, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 168.71, 164.06, 158.90, 153.38, 138.42, 128.41, 127.42, 127.10, 95.45, 56.26,
51.59, 44.26, 42.25, 28.97, 12.07.
N-Benzyl-2-(4-(3-(isoxazol-3-yl)ureido)piperidin-1-yl)acetamide hydrochloride (A12): yield: 65.6%. mp: 83.4–85.3°C. ESI-MS (m/z) calcd for C18H24N5O3
+ [M + H]+ 358.1874; found 358.19. 1H NMR (400 MHz, DMSO-d
6) δ 9.95 (s, 1H), 9.46 (s, 1H), 9.18 (s, 1H), 8.67 (s, 1H), 7.37-7.25 (m, 5H), 6.72
(s, 1H), 4.35 (d, J = 4.0 Hz, 2H), 4.03 (d, J = 4.0 Hz, 2H), 3.49 (d, J = 12.0 Hz, 2H), 3.18 (d, J = 8.0 Hz, 2H), 2.03 (d, J = 12.0 Hz, 2H), 1.77 (t, J = 12.0 Hz, 2H), 1.17 (t, J = 8.0 Hz, 1H); 13C NMR (151 MHz, DMSO-d
6) δ 169.12, 157.45, 156.89, 155.54, 140.31, 128.70, 128.55, 128.24, 96.38, 65.31,
50.75, 46.21, 44.76, 30.98.
2,2'-((Carbonylbis(azanediyl))bis(piperidine-4,1-diyl))bis(N-benzylacetamide) hydrochloride (A13): yield: 67.7%. mp: 108.1–109.3°C. ESI-MS (m/z) calcd for C29H41N6O3
+ [M + H]+ 521.3235; found 521.37. 1H NMR (400 MHz, DMSO-d
6) δ 10.00 (s, 1H), 9.27 (d, J = 8.0 Hz, 1H), 7.36-7.25 (m, 5H, ArH), 4.35 (d, J = 8.0 Hz, 2H), 4.01-3.97 (m, 2H), 3.58 (d, J = 8.0 Hz, 1H), 3.45 (d, J = 12.0 Hz, 2H), 3.15 (t, J = 12.0 Hz, 2H), 1.95 (d, J = 12.0 Hz, 2H), 1.71-1.62 (m, 2H); 13C NMR (151 MHz, DMSO-d
6) δ 164.06, 156.81, 138.46, 128.40, 127.42, 127.08, 56.21, 51.69, 44.10, 42.22, 29.36.
Neuroprotection Assay Against L-Glutamic Acid–induced Cell Damage in SH-SY5Y Cells
The SH-SY5Y cells were purchased from American Type Culture Collection (ATCC), and
cultured in EMEM/F12 (ATCC) with 10% fetal bovine serum (EX-CELL), 100 U/mL penicillin,
and 100 μg/mL streptomycin (all from Gibco, Shanghai, China) at a condition of 37°C,
5% CO2. SH-SY5Y cells were divided into normal culture group, model group, and treatment
group. Fenazinel (Shanghai Institute of Pharmaceutical Industry Co., Ltd., Shanghai,
China) was used as a positive control drug. For primary screening of the neuroprotective
activity of the compounds, the concentration gradient was 0.1, 1, and 10 µmol/L (two
multiple holes for each concentration); for further screening of the cytotoxicity
of a compound, the concentration gradient was 10, 20, 50, and 100 µmol/L (three multiple
holes for each concentration). SH-SY5Y cells in the treatment group were pretreated
with different concentrations of the test substance for 30 minutes and then incubated
with 300 µmol/L L-glutamic acid obtained from Sigma for 24 hours. Normal and L-glutamic acid–injured SY5Y cells were treated with the same volume of phosphate buffer
saline (PBS). After 24 hours, an MTT assay was performed to assess cell viability
using an MTT assay kit (Abcam) according to the manufacturer's instruction. Optical
density (OD) was assessed through spectrophotometry with a micro-plate reader (Thermo
Fisher Scientific, Shanghai, China) at 570 nm. The following formula was used: cell
viability rate (%) = (OD values of the treated groups − OD values of model groups)/(OD
values of the normal groups − OD values of model groups) × 100%.
Hypoxia Tolerance Assay
Male ICR mice (18–20 g, Sipu-BiKAI, SCXK2008–0016) were divided into control and treatment
groups (n = 10 per group). Mice in the treatment groups were given Fenazinel or A10 at a dose of 20 mg/kg through a tail vein intravenous injection. Mice in the control
group were given the same volume of DMSO. After the treatment, mice were placed in
250 mL grinding mouth bottles containing 5 g sodium lime (one mouse in a bottle).
After sealing, the survival time of the mice was observed and recorded.
hERG Inhibitory Activity Assay
hERG inhibition ratio test assay was conducted in CHO-hERG cells (ATCC) according
to a reported study.[19] The whole-cell recordings were conducted using Automated Qpatch. The cells were
treated with different concentrations of Fenazinel and compound A10 (0.16–40 μmol/L). The degree of hERG channel inhibition was determined by the following
equation: Inhibition (%) = (1 − variation in the current before and after the addition
of a test substance/variation in the current before and after the addition of a medium) × 100.
The experiments were performed three times in parallel. Cardiotoxicity of the compound
was predicted as IC50 values of the hERG channel, as well as the hERG inhibition ratio (%) of the compound
at a high dose (40 μmol/L).
MCAO-Induced Cerebral Ischemia/Reperfusion Injury Model
The Sprague-Dawley (SD) rats (male, 240.0 ± 20.0 g, Beijing Charles River Co., Ltd.,
Beijing, China) were raised under the condition of a 12-hour light/12-hour dark cycle,
25 ± 2°C, and a relative humidity of 45 ± 5% for 7-day acclimation at the Pharmacological
Evaluation and Research Animal Center. Before the operation, the rats were fasted
for 12 hours. After anesthetizing the rats with 1% pentobarbital sodium (Sigma) at
a dose of 40 mg/kg, the skin of the neck was incised and the tissue was bluntly separated
to expose the internal carotid arteries and right common carotid artery. The middle
cerebral artery was blocked by a nylon thread inserted from the common carotid artery.
After 1.5 hours of ischemia, the nylon thread was removed and the incision was sutured.
The successful establishment of the MCAO model could be observed as a contralateral
lower limb paralysis in rats.
The MCAO rats were given a solution (5% DMSO, 40% PEG 400, 5% Tween 80, and normal
saline) containing different concentrations of compound A10 (1, 3, and 5 mg/kg, iv). At the endpoint of the experiment, rats were anesthetized
with 1% pentobarbital sodium (40 mg/kg) and sacrificed. The complete brain was isolated.
After being cleaned with PBS and frozen at −20°C, the brains were cut into 2-mm thick
slices, then dyed with 2% 2,3,5-triphenyltetrazolium chloride (TTC, Sigma, St. Louis,
MO, United States) solution at 37°C for 30 minutes. The percentage of infarct area
was quantified using Image J software. Each experiment was repeated five times.