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Yearb Med Inform 2013; 22(01): 155-158
DOI: 10.1055/s-0038-1638847
DOI: 10.1055/s-0038-1638847
Original Article
Knowledge Representation and Management: Towards an Integration of a Semantic Web in Daily Health Practice
Further Information
Correpsondence to:
Prof. SJ. Darmoni, MD, PhD.
Rouen University Hospital
Department of BioMedical Informatics
1 rue de Gérmont
76031 Rouen Cedex, France
Phone: +33(0)232 8888 29
Fax: +33(0)232 8889 09
Email: stefan.darmoni@chu-rouen.fr
Publication History
Publication Date:
05 March 2018 (online)
Summary
Objective: To summarize the best papers in the field of Knowledge Representation and Management (KRM).
Methods: A synopsis of the four selected articles for the IMIA Yearbook 2013 KRM section is provided, as well as highlights of current KRM trends, in particular, of the semantic web in daily health practice. The manual selection was performed in three stages: first a set of 3,106 articles, then a second set of 86 articles followed by a third set of 15 articles, and finally the last set of four chosen articles.
Results: Among the four selected articles (see Table 1), one focuses on knowledge engineering to prevent adverse drug events; the objective of the second is to propose mappings between clinical archetypes and SNOMED CT in the context of clinical practice; the third presents an ontology to create a question-answering system; the fourth describes a biomonitoring network based on semantic web technologies.
Conclusion: These four articles clearly indicate that the health semantic web has become a part of daily practice of health professionals since 2012. In the review of the second set of 86 articles, the same topics included in the previous IMIA yearbook remain active research fields: Knowledge extraction, automatic indexing, information retrieval, natural language processing, management of health terminologies and ontologies.
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Keywords
Semantic web - knowledge management - abstracting and indexing as a topic - vocabulary, controlled - biomonitoring
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References
- 1 Lamy JB, Seroussi B, Griffon N, Kerdelhue G, Jaulent MC, Bouaud J. Formalizing literature search and review strategy to select candidate best papers for the IMIA Yearbook. Submitted to AMIA. 2013
- 2 Koutkias V, Kilintzis V, Stalidis G, Lazou K, Nies J. et al. Knowledge engineering for adverse drug event prevention: on the design and development of a uniform, contextualized and sustainable knowledge-based framework. J Biomed Inform 2012; Jun 45 (3) 495-506.
- 3 Patient Safety Through Intelligent Procedures in Medication (PSIP). URL: http://www.psip-project.eu/ (Accessed April, 30 2012).
- 4 Meizoso García M, Iglesias Allones JL, Martínez Hernández D, Taboada Iglesias MJ. Semantic similarity-based alignment between clinical archetypes and SNOMED CT: an application to observations. Int J Med Inform 2012; Aug 81 (8) 566-78.
- 5 Patrick J, Li M. An ontology for clinical questions about the contents of patient notes. J Biomed Inform. 2012; Apr 45 (2) 292-306.
- 6 Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P. et al. Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. J Med Internet Res 2012; May 29 14 (3) e73.
- 7 Detecting and Eliminating Bacteria Using Information Technology (DebugIT). URL: http://www.debugit.eu/ (Accessed April, 30 2012).
- 8 Rassinoux AM. Knowledge Representation and Management: Towards Patient Health Self-management. Yearb Med Inform 2012; 7 (1) 126-9.
- 9 Knowledge Representation in Medicine (KR-Med). URL: kr-med.org/ (Accessed April, 30 2012).
- 10 AMIA working group Knowledge Representation and Semantics. URL: http://www.amia.org/programs/working-groups/knowledge-representation-and-semantics (Accessed April, 30 2012).
- 11 International Conference on Biomedical Ontology (ICBO). http://kr-med.org/icbofois2012/icbo.htm (Accessed April, 30 2012).
- 12 Semantic Web Applications and Tools for Life Sciences (SWAT4LS). URL: http://www.swat4ls.org/ (Accessed April, 30 2012).
- 13 Semantic Web Health Care and Life Sciences Interest Group. URL: http://www.w3.org/blog/hcls/ (Accessed April, 29 2012).
- 14 Semantic Interoperability for Health Network. URL: http://www.semantichealthnet.eu/ (Accessed April, 29 2012).
- 15 Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T. et al. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res 2011; Jul 39 (Web Server issue) W541-5.
- 16 Grosjean J, Merabti T, Griffon N, Dahamna B, Darmoni SJ. Teaching medicine with a terminology/ontology portal. Stud Health Technol Inform 2012; 180: 949-53.
- 17 Informatics for Integrating Biology & the Bedside (I2B2). URL: https://www.i2b2.org (Accessed April, 30 2012).
Correpsondence to:
Prof. SJ. Darmoni, MD, PhD.
Rouen University Hospital
Department of BioMedical Informatics
1 rue de Gérmont
76031 Rouen Cedex, France
Phone: +33(0)232 8888 29
Fax: +33(0)232 8889 09
Email: stefan.darmoni@chu-rouen.fr
-
References
- 1 Lamy JB, Seroussi B, Griffon N, Kerdelhue G, Jaulent MC, Bouaud J. Formalizing literature search and review strategy to select candidate best papers for the IMIA Yearbook. Submitted to AMIA. 2013
- 2 Koutkias V, Kilintzis V, Stalidis G, Lazou K, Nies J. et al. Knowledge engineering for adverse drug event prevention: on the design and development of a uniform, contextualized and sustainable knowledge-based framework. J Biomed Inform 2012; Jun 45 (3) 495-506.
- 3 Patient Safety Through Intelligent Procedures in Medication (PSIP). URL: http://www.psip-project.eu/ (Accessed April, 30 2012).
- 4 Meizoso García M, Iglesias Allones JL, Martínez Hernández D, Taboada Iglesias MJ. Semantic similarity-based alignment between clinical archetypes and SNOMED CT: an application to observations. Int J Med Inform 2012; Aug 81 (8) 566-78.
- 5 Patrick J, Li M. An ontology for clinical questions about the contents of patient notes. J Biomed Inform. 2012; Apr 45 (2) 292-306.
- 6 Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P. et al. Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. J Med Internet Res 2012; May 29 14 (3) e73.
- 7 Detecting and Eliminating Bacteria Using Information Technology (DebugIT). URL: http://www.debugit.eu/ (Accessed April, 30 2012).
- 8 Rassinoux AM. Knowledge Representation and Management: Towards Patient Health Self-management. Yearb Med Inform 2012; 7 (1) 126-9.
- 9 Knowledge Representation in Medicine (KR-Med). URL: kr-med.org/ (Accessed April, 30 2012).
- 10 AMIA working group Knowledge Representation and Semantics. URL: http://www.amia.org/programs/working-groups/knowledge-representation-and-semantics (Accessed April, 30 2012).
- 11 International Conference on Biomedical Ontology (ICBO). http://kr-med.org/icbofois2012/icbo.htm (Accessed April, 30 2012).
- 12 Semantic Web Applications and Tools for Life Sciences (SWAT4LS). URL: http://www.swat4ls.org/ (Accessed April, 30 2012).
- 13 Semantic Web Health Care and Life Sciences Interest Group. URL: http://www.w3.org/blog/hcls/ (Accessed April, 29 2012).
- 14 Semantic Interoperability for Health Network. URL: http://www.semantichealthnet.eu/ (Accessed April, 29 2012).
- 15 Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T. et al. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res 2011; Jul 39 (Web Server issue) W541-5.
- 16 Grosjean J, Merabti T, Griffon N, Dahamna B, Darmoni SJ. Teaching medicine with a terminology/ontology portal. Stud Health Technol Inform 2012; 180: 949-53.
- 17 Informatics for Integrating Biology & the Bedside (I2B2). URL: https://www.i2b2.org (Accessed April, 30 2012).