Open Access
CC BY-NC-ND 4.0 · Asian J Neurosurg
DOI: 10.1055/s-0046-1817816
Research Article

Electron Microscopic Insights into Degenerating Lumbar Intervertebral Disc: A Prospective, Cohort Study

Authors

  • Prashant Lakhe

    1   Department of Neurosurgery, All India Institute of Medical Sciences, Nagpur, Maharashtra, India
  • Chayanika Kutum

    2   Department of Anaesthesiology, All India Institute of Medical Sciences, Nagpur, Maharashtra, India
  • Anil Kumar BC

    1   Department of Neurosurgery, All India Institute of Medical Sciences, Nagpur, Maharashtra, India
  • Niraj Ghimire

    3   Department of Neurosurgery, Nepalgunj Medical College, Nepal
  • Hukum Singh

    4   Department of Neurosurgery, Govind Ballabh Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
  • Vineeta Batra

    5   Department of Pathology, Govind Ballabh Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
  • Daljit Singh

    4   Department of Neurosurgery, Govind Ballabh Pant Institute of Post Graduate Medical Education and Research, New Delhi, India
 

Abstract

Objective

Degenerative disc disease is a leading cause of chronic low back pain, yet radiological and histological assessments often fail to explain symptom severity. Existing studies rarely incorporate electron microscopy (EM), leaving a gap in knowledge regarding cellular and extracellular matrix (ECM) alterations at the ultrastructural level and their relationship with clinical outcomes. This study aimed to investigate ultrastructural changes in lumbar intervertebral disc tissue using EM and to correlate these findings with clinical symptoms and radiological features.

Materials and Methods

A prospective observational study was conducted in 50 patients undergoing lumbar discectomy. Disc tissue was analyzed using EM. Clinical parameters (visual analogue scale [VAS] score, symptom duration) and MRI features (Pfirrmann grading, Modic changes) were recorded and statistically correlated with EM findings.

Results

Chondrocyte clustering (88%) and intracellular inclusion bodies (56%) were the most common EM findings. Both were significantly associated with higher VAS scores (p = 0.02 and p = 0.009, respectively) and longer symptom duration. Chondrocyte clustering and inclusions increased with higher Pfirrmann grades (p = 0.015 and p = 0.022, respectively). No significant association was found between Modic changes and the study outcomes.

Conclusion

EM revealed critical ultrastructural changes in degenerating lumbar discs, with chondrocyte clustering and inclusions emerging as potential morphological markers of disease severity and chronicity.


Introduction

Intervertebral disc degeneration is one of the most common causes of chronic low back pain and radiculopathy, affecting millions worldwide and posing a significant socioeconomic burden.[1] [2] The intervertebral disc, particularly the nucleus pulposus and annulus fibrosus, undergoes progressive biochemical and structural changes with age, mechanical stress, and injury.[3] While radiological imaging modalities, such as MRI and CT scans, have enabled noninvasive evaluation of disc degeneration, they provide only macroscopic information. Although essential for diagnosis and surgical planning, these imaging techniques often lack the resolution to assess ultrastructural changes occurring at the cellular and subcellular levels within the disc tissue.[4] [5]

Electron microscopy (EM) provides unparalleled resolution in analyzing biological tissues, allowing for the visualization of ultrastructural alterations that remain undetectable through conventional light microscopy or radiographic imaging.[6] The application of EM in evaluating intervertebral disc pathology remains relatively underexplored. Previous studies have primarily focused on histological grading and gross degenerative changes, with limited emphasis on the ultrastructural characteristics of disc material in correlation with clinical presentation.[7] Specifically, the association between electron microscopic changes in disc tissue and the duration and severity of patient symptoms has not been comprehensively investigated.

Degenerative disc disease (DDD) exhibits a spectrum of pathological alterations, ranging from early proteoglycan loss and disorganization of collagen fibers to advanced calcification, neovascularization, and cellular apoptosis.[8] [9] These microscopic changes likely precede and contribute to the macroscopic radiological findings observed in advanced disc degeneration. However, the progression and clinical significance of these changes remain poorly understood, particularly concerning symptomatology. Furthermore, variability in patient-reported symptoms, ranging from mild discomfort to debilitating pain, despite similar imaging findings, suggests that factors beyond radiological evidence may influence the clinical course of DDD.[10]

In an effort to bridge this gap in knowledge, the present study was designed to investigate the ultrastructural characteristics of intervertebral disc material obtained from patients undergoing discectomy. By employing EM, we aimed to evaluate the disc's microarchitectural features, including collagen fiber arrangement, cellular morphology, presence of degenerative debris, and other subcellular anomalies. We further sought to correlate these findings with the duration and severity of clinical symptoms and radiological grading of disc degeneration. This is one of the first studies attempting to establish a direct association between EM-based disc changes and clinical parameters in patients with lumbar disc herniation. Understanding these associations may enhance our comprehension of disc degeneration at a molecular level and offer potential insights into personalized treatment approaches based on the underlying pathology. Through this study, we hope to contribute to the growing body of knowledge in spinal pathology and advocate for integrating ultrastructural analysis into routine disc evaluation, where feasible, to improve diagnostic accuracy and therapeutic outcomes.


Materials and Methods

This prospective, observational study was conducted in the Department of Neurosurgery of a tertiary care center between January 2020 and December 2021. The primary aim was to analyze ultrastructural changes in excised lumbar intervertebral disc tissue using EM and correlate these findings with clinical symptoms and MRI-based radiological features in patients with lumbar disc disease.

Study design and ethical considerations: the study protocol was reviewed and approved by the Institutional Ethics Committee, and written informed consent was obtained from all participants. All procedures were conducted in accordance with the ethical standards of the Committee on Human Experimentation and conformed to the principles of the Declaration of Helsinki. No personal identifiers were used in the documentation or analysis of clinical data.

Subject selection: fifty consecutive patients presenting with classical signs and symptoms of lumbar disc herniation, confirmed on MRI, and scheduled for surgical intervention (discectomy) were included. These patients formed the study group. No control group was included due to ethical limitations associated with disc sampling from asymptomatic individuals.

Inclusion criteria for the study were: adult patients between 18 and 65 years of age with a clinical diagnosis of lumbar disc disease, presenting with low back pain with or without radiculopathy, who demonstrated MRI-confirmed lumbar disc herniation with degenerative changes, and were planned for surgical management via discoidectomy. Exclusion criteria consisted of patients with a history of previous spinal surgery at the affected disc level, those with infectious disc pathology such as tubercular discitis, known malignancy, or systemic diseases that could affect connective tissue structure, including rheumatoid arthritis and systemic lupus erythematosus. Patients with diabetes mellitus and those with a history of chronic smoking exceeding 10 pack-years were also excluded from the study.

Baseline demographic data, including age, sex, weight, and occupation, were recorded at the time of admission.

Clinical and radiological evaluation: a detailed clinical history was obtained, focusing on the duration and severity of symptoms. Pain severity was quantified using the visual analogue scale (VAS). All patients underwent lumbar spine MRI, and degeneration severity was assessed using the Pfirrmann grading system and Modic classification.[11] [12] ([Tables 1] and [2]). MRI evaluations were performed by two independent radiologists blinded to clinical and operative details to minimize assessment bias.

Table 1

Pfirrmann grading system for lumbar intervertebral disc degeneration based on MRI characteristics, including disc structure, nucleus-annulus distinction, signal intensity, and disc height

Grade

Structure

Distinction of nucleus and annulus

Signal Intensity

Height of disk

I

Homogeneous, bright white

Clear

Hyperintense, isointense to cerebrospinal fluid

Normal

II

Inhomogeneous, with or without horizontal bands

Clear

Hyperintense, isointense to cerebrospinal fluid

Normal

III

Inhomogeneous, gray

Unclear

Intermediate

Normal to slightly decreased

IV

Inhomogeneous, gray to black

Lost

Intermediate to hypointense

Normal to moderately decreased

V

Inhomogeneous, black

Lost

Hypointense

Collapsed disk space

Table 2

Modic classification of vertebral endplate changes on MRI, describing signal intensity patterns on T1- and T2-weighted images associated with different types of degenerative changes

Type I Modic change

Hypo-intense signal intensity of end-plates on T1-weighted image (T1WI) and hyper-intense signal on T2WI

Type II Modic change

Hyper-intense signal intensity on both T1WI and T2WI

Type III Modic change

Hypo-intense signal intensity on both T1WI and T2WI

Surgical technique and tissue handling: all patients underwent standard or minimally invasive lumbar discectomy under general anesthesia. The surgical approach was determined based on the location of the disc herniation and the surgeon's preference.

Immediately after excision, disc specimens were placed in Karnovsky's fixative, comprising 2.5% glutaraldehyde and 2% formaldehyde in 0.1 M sodium cacodylate buffer (pH 7.4). Specimens were stored at 4°C for up to 7 days due to logistical constraints before being processed. Secondary fixation was performed using 1% osmium tetroxide, followed by dehydration in graded ethanol and embedding in epoxy resin. Ultrathin sections were examined under a transmission electron microscope.

Data analysis and statistical methods: data were analyzed using SPSS version 25.0. Continuous variables (e.g., age, VAS scores) were expressed as mean ± standard deviation, while categorical variables were presented as frequencies and percentages. Depending on data normality, correlations between EM findings and clinical/radiological features were analyzed using Pearson or Spearman correlation coefficients. As appropriate, group comparisons were performed using student's t-test or the Mann–Whitney U test. Statistical significance was set at p < 0.05.


Results

This prospective study was conducted from January 2020 to December 2021 and included 50 patients (28 males, 22 females) presenting with lumbar disc disease. The majority of patients (31; 62%) were aged between 40 and 60 years, with 12 (24%) younger than 40 years and 7 (14%) older than 60 years. The most frequently affected disc level was L4–L5 in 26 patients (52%), followed by L5–S1 in 14 (28%) and L3–L4 in 10 (20%).

The median duration of symptoms was 12 months (range, 1–30 months). Pain severity, assessed by the VAS, revealed that 20 patients (40%) reported a score of 7 and another 20 (40%) reported a score of 8. Four patients (8%) each had scores of 6 and 9, while 2 patients 23 (4%) reported the maximum score of 10. Surgical intervention was performed exclusively in patients with VAS scores of 6 or higher.

MRI evaluation demonstrated that 31 patients (62%) had Pfirrmann grade 4 disc degeneration, 13 patients (26%) had grade 5, and 6 patients (12%) had grade 3. No patients exhibited 1 or 2 changes. Regarding Modic changes, 12 (24%) had type 1, 32 (64%) type 2, and 6 (12%) type 3 changes.

Electron microscopic findings: EM revealed consistent ultrastructural abnormalities in disc tissue:

  • Chondrocyte clustering (defined as the grouping of two or more chondrocytes) was present in 44 patients (88%). ([Fig. 1])

  • Intracellular inclusion bodies, indicating protein aggregates, were observed in 28 patients (56%). ([Fig. 2])

  • Collagen abnormalities, characterized by irregular collagen bundles surrounding chondrocytes, were noted in 33 patients (66%).

  • Chondron formation, characterized by clusters of two fused chondrocytes, was identified in 10 patients (20%). ([Fig. 3])

Zoom
Fig. 1 Electron micrograph showing a cluster of three chondrocytes within the nucleus pulposus. An intracellular inclusion body is visible within one of the cells (indicated by the red arrow), suggesting progressive cellular degeneration. Surrounding the chondrocytes is an encircling extracellular matrix (blue arrow), indicative of ongoing matrix remodeling in response to degenerative changes.
Zoom
Fig. 2 High-resolution electron micrograph of a degenerating chondrocyte containing prominent intracellular inclusion bodies (red arrow). The cell is enveloped by a dense and irregular pericellular matrix, reflecting cellular stress and altered matrix synthesis typical of advanced disc degeneration.
Zoom
Fig. 3 Electron micrograph illustrating a chondron—two chondrocytes clustered within a shared pericellular capsule. This structural arrangement may represent a reparative adaptation or a degenerative phenotype, commonly observed in discs with osteophyte formation or chronic degenerative changes.

These EM features showed a positive correlation with pain severity and symptom duration ([Tables 3] and [4]).

Table 3

Correlation between electron microscopic findings in lumbar disc tissue and pain severity (VAS score)

Electron microscopic findings

Pain severity (VAS score)

p-Value

Test applied

6

7

8

9

10

Chondrocyte clustering

Absent

2

3

1

0

0

0.02

Chi-square for trend

Present

2

17

19

4

2

Inclusions

Absent

3

12

6

1

0

0.009

Present

1

8

14

3

2

ECM and collagen abnormality

Absent

2

6

4

3

2

0.209

Present

2

14

16

1

0

Abbreviations: ECM, extracellular matrix; VAS, visual analogue scale.


Note: The table shows the distribution of chondrocyte clustering, intracellular inclusions, and ECM/collagen abnormalities across VAS scores, along with corresponding p-values and statistical tests used.


Table 4

Comparison of symptom duration (in months) with the presence or absence of specific electron microscopic features in lumbar disc tissue

Duration (mo)

Electron microscopic feature

p-Value

Test performed

Absent

Present

Chondrocyte clustering

 Number

6

44

0.010

Mann–Whitney

 Mean ± SD

6.3 ± 2.4

13.0 ± 5.9

 Median

6

14

 IQR

2.0

7.0

 Range

3–10

5–28

Inclusions

 Number

22

28

0.018

Mann–Whitney

 Mean ± SD

8.5 ± 3.2

14.2 ± 6.3

 Median

8

15

 IQR

4.0

6.0

 Range

4–16

6–30

ECM and collagen abnormalities

 Number

17

33

0.075

Mann–Whitney

 Mean ± SD

10.5 ± 5.8

13.0 ± 6.4

 Median

10

12

 IQR

4.0

5.5

 Range

5–22

6–28

Abbreviations: ECM, extracellular matrix; IQR, interquartile range; SD, standard deviation.


Note: Data are presented as mean ± SD, median, interquartile range (IQR), and range. Statistical significance was assessed using the Mann–Whitney test.


Correlation with Pain Severity (VAS Score)

Chondrocyte clustering was significantly associated with higher VAS scores (p = 0.02, chi-square for trend). Inclusion bodies also correlated significantly with pain severity (p = 0.009). extracellular matrix (ECM) and collagen abnormalities showed no significant association with pain (p = 0.209).


Correlation with Symptom Duration

Patients with chondrocyte clustering had a median symptom duration of 14 months 29 (interquartile range [IQR]: 5–28), compared with 6 months (IQR: 3–10) in those without clustering (p = 0.010). Inclusion bodies appeared in patients with a median duration of 15 months (IQR: 6–30) versus 8 months (IQR: 4–16) when absent (p = 0.018). ECM abnormalities showed a trend toward longer duration but were not statistically significant (p = 0.075).


Correlation with MRI Findings

The prevalence of chondrocyte clustering increased with Pfirrmann grade: five out of six patients in grade 3, 28 out of 31 in grade 4, and 11 out of 13 in grade 5 (p = 0.015, chi-square for trend). Inclusion bodies were more common in higher grades (p = 0.022). ECM abnormalities were higher in severe degeneration but did not reach statistical significance (p = 0.09; [Table 5]). No statistically significant associations were found between EM findings and Modic change types (all p > 0.05; [Table 6]).

Table 5

Association between symptom duration and presence of electron microscopic features in lumbar disc specimens

Duration (mo)

Electron microscopic feature

p-Value

Test performed

Absent

Present

Chondrocyte clustering

 Number

6

44

0.010

Mann–Whitney

 Mean ± SD

6.3 ± 2.4

13.0 ± 5.9

 Median

6

14

 IQR

2.0

7.0

 Range

3–10

5–28

Inclusions

 Number

22

28

0.018

Mann–Whitney

 Mean ± SD

8.5 ± 3.2

14.2 ± 6.3

 Median

8

15

 IQR

4.0

6.0

 Range

4–16

6–30

ECM and collagen abnormalities

 Number

17

33

0.075

Mann–Whitney

 Mean ± SD

10.5 ± 5.8

13.0 ± 6.4

 Median

10

12

 IQR

4.0

5.5

 Range

5–22

6–28

Note: Duration is compared between patients with and without chondrocyte clustering, inclusion bodies, and ECM/collagen abnormalities. Results include mean ± SD, median, interquartile range (IQR), and range. Statistical analysis was performed using the Mann–Whitney U test.


Table 6

Correlation between electron microscopic features and Modic type changes on MRI

Electron microscopic feature

Modic type

p-Value

Test applied

Type 1

Type 2

Type 3

Chondrocyte clustering

Absent

1

3

2

0.229

Chi-square for trend

Present

11

29

4

Odds ratio

1

0.88

0.18

Inclusions

Absent

3

10

9

0.19

Present

6

15

7

Odds ratio

1

0.75

0.26

ECM and collagen abnormality

Absent

4

7

6

0.12

Present

5

18

10

Odds ratio

1

0.31

0.33

Note: The table presents the distribution of chondrocyte clustering, inclusion bodies, and ECM/collagen abnormalities across Modic types 1, 2, and 3, along with corresponding p-values, odds ratios, and the statistical test applied (chi-square for trend).



Temporal Progression

Analysis suggests a temporal progression of degenerative ultrastructural changes detectable by EM: collagen abnormalities appear earliest (median duration: approximately 12 months), followed by chondrocyte clustering (approximately 14 months), and then appearance of inclusion bodies (approximately 15 months).

Osteophyte formation: osteophytes were identified in 10 patients (20%): six had osteophytes in both the anterior and posterior regions, and 4 had osteophytes only in the posterior region. All these patients exhibited chondrocyte clustering and chondron formation near osteophytes, indicating a possible role for chondrocytes in osteophyte development.



Discussion

This study offers ultrastructural insight into lumbar disc degeneration by correlating electron microscopic findings with clinical and imaging parameters. Notably, chondrocyte emerged as a predominant feature, observed in 88% of specimens, and was significantly associated with higher pain severity (VAS score) and longer symptom duration. This suggests that chondrocyte clustering may serve as a morphological marker of disease progression.

Chondrocyte clustering has been reported as a hallmark of intervertebral disc degeneration may indicate a proliferative response to mechanical stress or matrix breakdown products. Previous studies have described these clusters as a result of clonal expansion of chondrocytes in degenerated human discs, potentially triggered by biomechanical or inflammatory stimuli.[13] [14] The presence of clustering in a high percentage of our samples raises several considerations: (1) is clustering an early event in degeneration, (2) does it represent a failed repair mechanism, or (3) could clustered chondrocytes represent a progenitor pool lineage differentiation, such as osteogenic transformation near osteophytes?

Inclusion bodies, seen in 56% of cases, also correlated with pain and duration, often in specimens with more severe degeneration. These granular inclusions may consist of matrix degradation products and calcium phosphate deposits, which form due to impaired molecular diffusion in the dense avascular disc matrix.[5] Their presence might reflect chronicity or a failed attempt at cellular homeostasis.

ECM abnormalities, observed in 66% of patients, manifested as irregular collagen bundles surrounding chondrocytes. These were associated with symptom duration and trended with pain severity. The ECM is vital for maintaining the disc's biomechanical properties, and its disruption can lead to a reduction in tensile strength and elasticity. Changes in ECM composition during degeneration include increased collagen types I, III, VI, and X, as well as elastin deposition and proteoglycan fragmentation.[15] [16] These alterations may initiate or perpetuate inflammatory cascades, leading to progressive disc dysfunction. Prior EM studies have described similar changes in collagen organization, including encircling ECM layers and abnormal fibril formation.[17] [18] Such disorganization can disrupt the annulus fibrosus' lamellar continuity, impairing its mechanical integrity.

Osteophyte formation, observed in 20% of patients, was always accompanied by chondrocyte clustering and chondron formation at the osteophyte interface. This could imply a reparative or adaptive response, possibly mediated by chondrocyte transdifferentiation into osteoblast-like cells, a phenomenon reported in osteoarthritis and suggested in spinal degeneration.[19] [20] This observation, although preliminary, invites further molecular investigation into models. the signaling pathways governing such transitions.

Despite the novel insights, the study has limitations. The COVID-19 pandemic and logistical challenges limited the sample size to 50. Delays between tissue procurement and EM analysis may have impacted ultrastructural integrity. Moreover, the absence of a standardized grading system for EM findings in disc tissue limits broader comparisons. Lastly, the lack of a control group of healthy disc tissue prevents definitive temporal staging of the observed changes. Nevertheless, this study reinforces EM's utility in identifying ultrastructural changes in lumbar discs, surpassing the resolution of light microscopy in distinguishing viable versus necrotic chondrocytes.[14] Given the growing burden of lumbar degenerative disease, with global prevalence projected to rise in tandem with aging populations,[21] [22] the need for ultrastructural biomarkers becomes increasingly relevant. This study supports the hypothesis that degeneration is a progressive, multifactorial process with distinct morphological stages observable at the cellular level.

EM can be a powerful adjunct in understanding intervertebral disc degeneration. Chondrocyte clustering appears to be a pivotal early event, strongly associated with clinical severity and radiological grades. Longer symptom duration is linked with more pronounced ultrastructural changes, supporting a temporal evolution of degeneration. ECM abnormalities and granular inclusions further corroborate chronic matrix degradation and cellular stress. These findings prompt new hypotheses about chondrocyte behavior in degeneration, including potential roles in osteophyte formation and lineage plasticity. Future research should explore the molecular regulators of chondrocyte transdifferentiation and assess whether these pathways could be targeted therapeutically to halt or reverse disc degeneration. Larger, longitudinal studies with better-defined EM scoring systems are needed to validate these findings and enhance diagnostic precision in spinal disorders.



Conflict of Interest

None declared.

Authors' Contributions

P.L. contributed to conceptualization, methodology, formal analysis, and writing—original draft, review, and editing. C.K. contributed to formal analysis and writing—original draft, review, and editing. A.K.B.C., N.G., and H.S.: data curation and writing—review and editing. V.B. contributed to formal analysis, data curation, and writing—review and editing. D.S. contributed to conceptualization, supervision, and writing—review and editing.


Ethical Approval

The study has received approval from the Institutional Ethics Committee of Maulana Azad Medical College (MAMC), New Delhi, and adheres to the principles outlined in the Declaration of Helsinki.



Address for correspondence

Prashant Lakhe, MCh
Department of Neurosurgery, All India Institute of Medical Sciences
Nagpur 441108, Maharashtra
India   

Publication History

Article published online:
27 February 2026

© 2026. Asian Congress of Neurological Surgeons. This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. (https://creativecommons.org/licenses/by-nc-nd/4.0/)

Thieme Medical and Scientific Publishers Pvt. Ltd.
A-12, 2nd Floor, Sector 2, Noida-201301 UP, India


Zoom
Fig. 1 Electron micrograph showing a cluster of three chondrocytes within the nucleus pulposus. An intracellular inclusion body is visible within one of the cells (indicated by the red arrow), suggesting progressive cellular degeneration. Surrounding the chondrocytes is an encircling extracellular matrix (blue arrow), indicative of ongoing matrix remodeling in response to degenerative changes.
Zoom
Fig. 2 High-resolution electron micrograph of a degenerating chondrocyte containing prominent intracellular inclusion bodies (red arrow). The cell is enveloped by a dense and irregular pericellular matrix, reflecting cellular stress and altered matrix synthesis typical of advanced disc degeneration.
Zoom
Fig. 3 Electron micrograph illustrating a chondron—two chondrocytes clustered within a shared pericellular capsule. This structural arrangement may represent a reparative adaptation or a degenerative phenotype, commonly observed in discs with osteophyte formation or chronic degenerative changes.