A Preliminary Study of Clinical Abbreviation Disambiguation in Real Time

Y. Wu; J. C. Denny; S. T. Rosenbloom; R. A. Miller; D. A. Giuse; M. Song; H. Xu

doi:10.4338/ACI-2014-10-RA-0088

Applied Clinical Informatics, Inhaltsverzeichnis

Appl Clin Inform 2015; 06(02): 364-374
DOI: 10.4338/ACI-2014-10-RA-0088

Research Article

Schattauer GmbH

A Preliminary Study of Clinical Abbreviation Disambiguation in Real Time

Y. Wu

¹School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA

,

J. C. Denny

²Department of Biomedical Informatics Camridge, Vanderbilt University, Nashville, Tennessee, USA

,

S. T. Rosenbloom

²Department of Biomedical Informatics Camridge, Vanderbilt University, Nashville, Tennessee, USA

,

R. A. Miller

²Department of Biomedical Informatics Camridge, Vanderbilt University, Nashville, Tennessee, USA

,

D. A. Giuse

²Department of Biomedical Informatics Camridge, Vanderbilt University, Nashville, Tennessee, USA

,

M. Song

³Department of Library and Information Science, Yonsei University, Seoul, Korea

,

H. Xu

¹School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA

› Institutsangaben

Abstract

Volltext

als PDF herunterladen

Keywords

Clinical abbreviation - machine learning - clinical documentation system

Referenzen

References
1 Berman JJ. Pathology abbreviated: a long review of short terms. Arch Pathol Lab Med 2004; 128 (03) 347-352.
2 Stetson PD, Johnson SB, Scotch M, Hripcsak G. The sublanguage of cross-coverage. Proc AMIA Symp 2002: 742-746.
3 Xu H, Stetson PD, Friedman C. A study of abbreviations in clinical notes. AMIA Annu Symp Proc 2007: 821-825.
4 Dawson Kp Fau ’Capaldi N Capaldi N, Fau–Haydon M Haydon M, Fau–Penna AC Penna AC. The paediatric hospital medical record: a quality assessment. 19920731 DCOM- 19920731(0726–3139 (Print)).
5 Walsh KE, Gurwitz JH. Medical abbreviations: writing little and communicating less. Archives of disease in childhood 2008; 93 (10) 816-817.
6 Manzar S, Nair AK, Govind Pai M, Al-Khusaiby S. Use of abbreviations in daily progress notes. Arch Dis Child Fetal Neonatal Ed 2004; 89 (04) F374.
7 Sheppard JE, Weidner LC, Zakai S, Fountain-Polley S, Williams J. Ambiguous abbreviations: an audit of abbreviations in paediatric note keeping. Archives of disease in childhood 2008; 93 (03) 204-206.
8 ISMP Medication Safety Alert –May 2, 2001. The Institute for Safe Medication Practices; 2001.
9 Schuemie MJ, Kors JA, Mons B. Word sense disambiguation in the biomedical domain: an overview. J Comput Biol 2005; 12 (05) 554-565.
10 Xu H, Stetson PD, Friedman C. Combining corpus-derived sense profiles with estimated frequency information to disambiguate clinical abbreviations. AMIA Annu Symp Proc 2012; 2012: 1004-1013.
11 Pakhomov S, Pedersen T, Chute CG. Abbreviation and acronym disambiguation in clinical discourse. AMIA Annu Symp Proc 2005: 589-593.
12 Liu H, Teller V, Friedman C. A multi-aspect comparison study of supervised word sense disambiguation. J Am Med Inform Assoc 2000; 11 (04) 320-331.
13 Moon S, Pakhomov S, Melton GB. Automated disambiguation of acronyms and abbreviations in clinical texts: window and training size considerations. AMIA Annu Symp Proc 2012; 2012: 1310-1319.
14 Pakhomov S. Semi-supervised Maximum Entropy based approach to acronym and abbreviation normalization in medical texts. Proceedings of the 40th Annual Meeting on Association for Computational Linguistics. Philadelphia, Pennsylvania: Association for Computational Linguistics 2002: 160-167.
15 Wu Y, Denny JC, Rosenbloom ST, Miller RA, Giuse DA, Xu H. A comparative study of current Clinical Natural Language Processing systems on handling abbreviations in discharge summaries. AMIA Annu Symp Proc 2012; 2012: 997-1003.
16 Weng C, Batres C, Borda T. et al. A real-time screening alert improves patient recruitment efficiency. AMIA Annu Symp Proc 2011; 2011: 1489-1498.
17 Filip D, Gao X, Angulo-Rodriguez L. et al. Colometer: a real-time quality feedback system for screening colonoscopy. World journal of gastroenterology: WJG 2012; 18 (32) 4270-4277.
18 Sandberg WS, Sandberg EH, Seim AR. et al. Real-time checking of electronic anesthesia records for documentation errors and automatically text messaging clinicians improves quality of documentation. Anesthesia and analgesia 2008; 106 (01) 192-201 table of contents.
19 Zhang Y, Fong S, Fiaidhi J, Mohammed S. Real-time clinical decision support system with data stream mining. Journal of biomedicine & biotechnology 2012; 2012: 580186.
20 Roden DM, Pulley JM, Basford MA. et al. Development of a large-scale de-identified DNA biobank to enable personalized medicine. Clin Pharmacol Ther 2008; 84 (03) 362-369.
21 Xu H, Wu Y, Elhadad N, Stetson PD, Friedman C. A new clustering method for detecting rare senses of abbreviations in clinical notes. J Biomed Inform 2012; 45 (06) 1075-1083.
22 Dawes M, Chan D. Knowing we practise good medicine: implementing the electronic medical record in family practice. Canadian family physician Medecin de famille canadien 2010; 56 (01) 15-6 e1-e3.
23 Westby GF. 2011 [cited 2015; Available from: http://drwes.blogspot.com/2011/01/results-are-in-age-vs-typing-speed-in.html