Abstract
This paper examines the limits of accuracy in reporting isolated
product yields (i.e., recovery of total mass from chromatography
or extractions) as well as ratios of isomers determined by HPLC,
GC, or NMR methods. Attention is directed to the magnitude of errors
encountered in the HPLC or GC measurements of such ratios when these
measurements are conducted without accurate calibrations or determinations
of response factors for the particular isomers. Accurately defined
mixtures of compounds (prepared by volumetric means) were examined
by the above methods and the obtained measurements compared with
the actual composition. The relative errors between actual content and the measured values are listed for all
comparisons. In addition, accuracy in the determination of weight
of a sample as a function of scale was also examined. The results
are tabulated for comparison and suggestions are made to the reader
as to how to avoid inaccurate reporting of experimental parameters.
The authors hope that disclosure of these facts will result in new
editorial policies requiring that a phrase ‘dr or er ratios reported in this paper
have not been validated by calibration ’ be inserted
into general experimental descriptions. In addition, such editorial
policy should also discourage the use of terms ‘de’ and ‘ee’ , as these descriptors do
not provide accurate and meaningful information about stereoisomer
composition. This latter issue has already been suggested in the
literature on several occasions.
1 Introduction
2 On the Question of Isolated Product Yields
3 On Determination of Accurate Weights
4 On the Question of Accurate Detection of Stereoisomer Ratios
5 Conclusion
Key words
accuracy of determination of ratios of stereoisomers - accuracy
of weighing - accuracy of product yield determination - product content determination - errors in reporting
of analytical data
References 1 Presented in part as ‘Short
Course on Integrity in Organic Synthesis’ for faculty and
students at University of British Columbia, Simon Fraser University,
University of Ottawa, and University of Oslo.
2a
Hudlicky T.
Chem. Rev.
1996,
96:
3
2b
Hudlicky T.
Reed JW. In The
Way of Synthesis
Wiley-VCH;
Weinheim,
Germany:
2007.
For essays and articles on this
topic, see:
3a Farber, C. Out of control: AIDS and the corruption of
medical science,
In HarperŽs
Magazine ; March 2006 , 37-52
3b
Morrissey SR.
Chem. Eng. News
2006,
84(45):
18
3c
Schultz WG.
Chem. Eng. News
2007,
85(11):
35
For an example, see:
4a
Jones RD.
Chem. Eng. News
2006,
84(8):
6
See also:
4b
Rovner S.
Chem.
Eng. News
2006,
84(6):
6 .
Further discussion of this topic and additional references are found
in reference 1b above (pages 197, 930)
5 For a discussion of accurate weighing
techniques, see: Kolthoff IM.
Sandell EB.
Meehan EJ.
Bruchenstein S.
Balance, Weights, and
Weighing, In Quantitative Chemical Analysis
4th
ed:
Collier-Macmillan;
Toronto:
1969.
Chap
19.
p.474-512
6 For example. see: Carlson R. In
Design and Optimization
in Organic Synthesis
Elsevier;
Amsterdam:
1992.
Efficiency metrics: For definition
of Evalue/EQvalue, see:
7a
Sheldon RA.
Chemtech
1994,
38
7b
Sheldon RA.
Chem. Ind.
1992,
903
7c
Sheldon RA.
Chem. Ind.
1997,
12
For definition of Effective Mass Yield (EMY), see:
7d
Bui VP.
Hansen TV.
Stenstrom Y.
Hudlicky T.
Green. Chem.
2000,
2:
263
For definition of Reaction Mass Efficiency (RME), see:
7e
Curzons AD.
Constable DJC.
Mortimer DA.
Cunningham VL.
Green Chem.
2001,
3:
1
7f
Constable DJC.
Curzons AD.
Cunningham VL.
Green Chem.
2002,
4:
521
8
Andraos J.
Green
Chem. Metrics
2009,
69
9
Andraos J.
Org.
Process Res. Develop.
2009,
13:
161
10 Gibbs free energy values and corresponding
isomer ratios: Values calculated at T = 295.15
K: 75/25 = 0.64 kcal/mol, 80/20 = 0.81
kcal/mol, 90/10 = 1.29
kcal/mol, 95/5 = 1.73 kcal/mol ,
99/1 = 2.70 kcal/mol,
199/1 = 3.10 kcal/mol.
11
Medina JR.
Cruz G.
Cabrera CR.
Soderquist JA.
J. Org.
Chem.
2003,
68:
4631
For examples, see:
12a
Deubner R.
Holzgrabe U.
Magn. Res. Chem.
2002,
40:
762
12b
Staubach B.
Buddrus J.
Angew. Chem. Int. Ed. Engl.
1996,
35:
1344
12c
Soto-Cairoli B.
Soderquist JA.
Org. Lett.
2009,
11:
401
12d
Soderquist JA.
Rane AM.
Tetrahedron
Lett.
1993,
34:
5031
12e
Burgos CH.
Canales E.
Matos K.
Soderquist JA.
J.
Am. Chem. Soc.
2005,
127:
8044
For determination of ratios by ³¹ P
NMR, see:
12f
Canales E.
Prasad KG.
Soderquist JA.
J. Am. Chem. Soc.
2005,
127:
11572
13
Buddrus J.
Herzog H.
Risch K.
Anal.
Chem.
1994,
66:
40
14
Clarideg TDW.
Davies SG.
Polywka MEC.
Roberts PM.
Russell AJ.
Savory ED.
Smith AD.
Org.
Lett.
2008,
10:
5433
15
Ward DE.
Rhee CK.
Tetrahedron Lett.
1991,
32:
7165
16
Tsai W.-L.
Hermann K.
Hug E.
Rohde B.
Dreiding
AS.
Helv.
Chim. Acta
1985,
68:
2238
17
Gawley RE.
J.
Org. Chem.
2006,
71:
2411