Synlett 2024; 35(14): 1707-1712
DOI: 10.1055/a-2216-4521
letter

Synthesis of Biomimetic Thioesters for Studies of Ketoreductase Domains from the Biosynthesis of Cytotoxic Polyketides

Sebastian Derra
,
Julian Hoffmann
,
Frank Hahn
This work was supported by Exploration Grant of the Boehringer Ingelheim Foundation (BIS) and a Material Cost Allowance of the Fund of the Chemical Industry (FCI).


Abstract

The synthesis of biomimetic thioesters for enzymatic studies of ketoreductase (KR) domains from polyketide synthases is described. A TBS-protected dihydroxyalkene fragment was synthesised by a sequence involving a Nagao acetate aldol reaction, a Mukaiyama propionate aldol reaction, and a methylene Wittig olefination. Fragment coupling to N-acetylcysteamine (SNAC) (E)-3-hydroxyhex-4-enethioates by an olefin cross-metathesis (OCM) and subsequent deprotection gave the potential KR product stereoisomers. An analogous OCM with a SNAC (E)-3-ketohex-4-enethioate did not give the desired KR precursor, but the reaction could successfully be replaced by a Horner–Wadsworth–Emmons olefination between a SNAC 3-ketothioester phosphonate and a TBS-protected dihydroxy aldehyde. After deprotection, an intramolecular cyclisation was observed that needs to be considered as a spontaneous side reactivity in the enzymatic assays.

Supporting Information



Publication History

Received: 19 September 2023

Accepted after revision: 22 November 2023

Accepted Manuscript online:
22 November 2023

Article published online:
17 January 2024

© 2024. Thieme. All rights reserved

Georg Thieme Verlag KG
Rüdigerstraße 14, 70469 Stuttgart, Germany

 
  • References and Notes

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  • 11 (2R,3R,5S)-3,5-Bis{[tert-butyl(dimethyl)silyl]oxy}-1-[(3aR,6S)-8,8-dimethyl-2,2-dioxido-tetrahydro-3H-3a,6-methanobenzo[c]isothiazol-1(4H)-yl]-2-methyldodecan-1-one (18) A stirred solution of propionylated Oppolzer sultame 16 (2.78 g, 10.3 mmol, 1.2 equiv) in CH2Cl2 (14.2 mL, 0.7 m) was cooled to 0 °C, and DIPEA (2.68 mL, 15.4 mmol, 1.8 equiv) and TMSOTf (3.24 mL, 17.9 mmol, 2.1 equiv) were added dropwise. The resulting solution was allowed to warm to r.t. and stirred overnight. In a separate flask, a solution of aldehyde 15 (2.45 g, 8.54 mmol, 1.0 equiv) in CH2Cl2 (14.2 mL, 0.6 m) was cooled to –78 °C. After dropwise addition of a 1 M solution of TiCl4 in CH2Cl2 (8.54 mL, 8.54 mmol), the solution was stirred for 15 min at –78 °C. Subsequently, the auxiliary-containing solution was added very slowly, while keeping the temperature below –75 °C. After stirring the mixture at –78 °C for 1 h, the reaction was quenched by the addition of sat. aq NH4Cl. The phases were separated and the aqueous one was extracted with CH2Cl2 (×3). The combined organic phases were washed with brine, dried (MgSO4), and filtered. The crude aldol product was dissolved in CH2Cl2 (42.7 mL, 0.2 M), and the solution was cooled to –78 °C. After dropwise addition of 2,6-lutidine (1.50 mL, 12.8 mmol, 1.5 equiv) and TBSOTf (2.77 mL, 12.8 mmol, 1.5 equiv), the solution was allowed to warm to r.t. and stirred for 3 h. The reaction was quenched by the addition of sat. aq NH4Cl. The resulting phases were separated, and the aqueous one was extracted with CH2Cl2 (×3). The combined organic phases were washed with brine, dried (MgSO4), and filtered. Purification by flash chromatography [silica gel, cyclohexane–EtOAc (15:1)] gave a light-brown oil; yield: 4.86 g (7.23 mmol, 85% over two steps); Rf = 0.19 (cyclohexane–EtOAc, 15:1); [α]D 20 +24.3 (c = 1.0, CH2Cl2).1H NMR (500 MHz, CDCl3): δ = 4.15 (dt, J = 8.7, 3.3 Hz, 1 H, 3-H), 3.87 (dd, J = 7.5, 5.0 Hz, 1 H, 20-H), 3.78–3.74 (m, 1 H, 5-H), 3.49 (d, J = 13.8 Hz, 1 H, 14-H), 3.43 (d, J = 13.8 Hz, 1 H, 14-H), 3.38 (dq, J = 6.7, 4.0 Hz, 1 H, 2-H), 2.06–1.83 (m, 5 H, 16-H, 17-H, 18-H, 19-H), 1.59–1.53 (m, 2 H, 4-H), 1.49–1.42 (m, 2 H, 6-H), 1.40–1.33 (m, 2 H, 16-H, 17-H), 1.31–1.26 (m, 10 H, 7-H, 8-H, 9-H, 10-H, 11-H), 1.17 (s, 3 H, 22-H), 1.14 (d, J = 6.7 Hz, 3 H, 13-H), 0.96 (s, 3 H, 22-H), 0.89–0.86 (m, 12 H, 12-H, 25-H), 0.84 (s, 9 H, 25-H), 0.14 (s, 3 H, 23-H), 0.11 (s, 3 H, 23-H), 0.03 (s, 3 H, 23-H), 0.02 (s, 3 H, 23-H). 13C NMR (125 MHz, CDCl3): δ = 173.8 (t, C-1), 69.9 (t, C-5), 69.6 (t, C-3), 65.5 (t, C-20), 53.4 (s, C-14), 48.1 (q, C-21), 47.9 (q, C-15), 46.9 (t, C-2), 44.8 (t, C-18), 39.9 (s, C-4), 38.9 (s, C-19), 38.8 (s, C-6), 33.0 (s, C-16), 32.0 (s, C-9), 29.9 (s, C-8), 29.5 (s, C-10), 26.7 (s, C-17), 26.2 (p, C-25), 26.1 (p, C-25), 25.1 (s, C-7), 22.8 (s, C-11), 21.5 (p, C-22), 20.0 (p, C-22), 18.3 (q, C-24), 14.3 (p, C-12), 9.8 (p, C-13), –3.71 (p, C-23), –3.75 (p, C-23), –4.0 (p, C-23), –4.8 (p, C-23). HRMS (ESI+): m/z [M + H]+ calcd for C35H70NO5SSi2: 672.4508; found: 672.4503
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  • 13 S-[2-(Acetylamino)ethyl] (3S,4E,6S,7R,9S)-7,9-Bis{[tert-butyl(dimethyl)silyl]oxy}-3-hydroxy-6-methylhexadec-4-enethioate (23) Grubbs–Hoveyda II catalyst S1 (8.1 mg, 13.0 μmol, 5 mol%) was added to a stirred solution of secondary alcohol (S)-12 (180 mg, 777 μmol, 3.0 equiv) and terminal alkene 11 (118 mg, 259 μmol, 1.0 equiv) in CH2Cl2 (5.2 mL, 0.05 m), and the mixture was refluxed for 6 h. The solvent was then removed in vacuo and the residue was purified by flash chromatography [silica gel, cyclohexane–EtOAc (1:1)] to give a brownish oil; yield: 164 mg (254 μmol, 98%); Rf = 0.22 (cyclohexane–EtOAc, 1:1); [α]D 20 –9.3 (c = 1.0, CH2Cl2). 1H NMR (500 MHz, CDCl3): δ = 5.80 (br, 1 H, NH), 5.70 (ddd, J = 15.5, 7.2, 0.6 Hz, 1 H, 5-H), 5.49 (ddd, J = 15.5, 6.6, 0.8 Hz, 1 H, 4-H), 4.59–4.56 (m, 1 H, 3-H), 3.73–3.67 (m, 2 H, 7-H, 9-H), 3.48–3.44 (m, 2 H, 18-H), 3.10–3.01 (m, 2 H, 17-H), 2.82–2.74 (m, 2 H, 2-H), 2.33–2.28 (m, 1 H, 6-H), 1.97 (s, 3 H, 20-H), 1.45–1.39 (m, 4 H, 8-H, 10-H), 1.31–1.26 (m, 10 H, 11-H, 12-H, 13-H, 14-H, 15-H), 0.97 (d, J = 6.9 Hz, 3 H, 21-H), 0.89–0.87 (m, 21 H, 16-H, 24-H), 0.06–0.04 (m, 12 H, 22-H). 13C NMR (125 MHz, CDCl3): δ = 198.8 (q, C-1), 170.5 (q, C-19), 134.7 (t, C-5), 130.9 (t, C-4), 73.5 (t, C-7), 70.5 (t, C-9), 69.9 (t, C-3), 51.2 (s, C-2), 42.2 (t, C-6), 41.6 (s, C-8), 39.5 (s, C-18), 38.1 (s, C-10), 32.0 (s, C-14), 29.9 (s, C-12), 29.5 (s, C-13), 29.0 (s, C-17), 26.1 (p, C-24), 26.0 (p, C-24), 25.1 (s, C-11), 23.4 (p, C-20), 22.8 (s, C-15), 18.3 (q, C-23), 15.2 (p, C-21), 14.3 (p, C-16), –3.6 (p, C-22), –3.9 (p, C-22), –4.0 (p, C-22), –4.1 (p, C-22). HRMS (ESI+): m/z [M + Na]+ calcd for C33H67NNaO5SSi2: 668.4171; found: 668.4151
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