References and Notes
1 Current addresses: E. J. Zylstra, 166 Chilton Ave, San Francisco, CA 94131, USA; M. W.-L. She, 3952 Angelo Ave, Oakland, CA 94619, USA; W. A. Salamant, Department of Chemistry, University of California, Irvine, California 92697, USA; J. W. Leahy, Exelixis Pharmaceuticals, Inc., 210 East Grand Ave, Box 511, South San Francisco, CA 94083, USA.
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11a This method improves upon preceding methods for isopentylidene synthesis, for it requires only commercially available reagents.
11b
Procedure for Isopentylidene Synthesis: To a 1-L flask under N2 were added the S-enantiomer of triol 5 (21.01 g, 0.1980 mol), 3-pentanone (80 mL, 0.79 mol), trimethyl orthoformate (33 mL, 0.30 mol), p-TsOH (0.44 g, 0.023 mol), anhyd MeOH (75 mL), and distilled CH2Cl2 (150 mL). The mixture was heated to reflux and stirred for 15 h. Et3N (1.8 mL, 0.013 mol) was added, and the mixture was stirred for 30 min. H2O (100 mL) was added, and the aqueous phase was extracted with CH2Cl2 (3 × 100 mL). The combined organic phases were dried over NaSO4, filtered, and concentrated to a clear, yellow-brown liquid. Flash chromatography (20% EtOAc-hexanes) yielded the 1,2-isopentylidene-protected 5 as a clear, yellow-tinged liquid (29 g, 85%). IR: 3510, 2950, 1460, 1170, 1080 cm-1. 1H NMR (300 MHz): δ = 0.87-0.93 (m, 6 H), 1.59-1.69 (m, 4 H), 1.79-1.85 (m, 2 H), 2.26 (t, J = 5.0 Hz, 1 H), 3.54 (t, J = 8.0 Hz, 1 H), 3.81 (dd, J = 6.0, 12.0 Hz, 2 H), 4.10 (dd, J = 6.0, 7.9 Hz, 1 H), 4.25 (m, 1 H).
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14 Spectral data for diol 8: 1H NMR (300 MHz): δ = 1.50 (ddd, J = 2.9, 7.8, 14.6 Hz, 1 H), 1.62-1.76 (m, 4 H), 2.19 (dd, J = 7.6, 13.8 Hz, 1 H), 2.47 (dd, J = 5.5, 13.7 Hz, 1 H), 2.85 (s, 2 H), 3.40 (dd, J = 6.8, 11.2 Hz, 1 H), 3.56 (dd, J = 3.3, 11.2 Hz, 1 H), 3.78 (s, 3 H), 3.82-3.90 (m, 1 H), 3.91-4.02 (m, 1 H), 4.42 (d, J = 11.0 Hz, 1 H), 4.56 (d, J = 11.0 Hz, 1 H), 4.76 (s, 1 H), 4.81 (s, 1 H), 6.87 (d, J = 8.6 Hz, 1 H), 7.26 (d, J = 8.6 Hz, 1 H). 13C NMR (100 MHz): δ = 22.8, 36.2, 42.1, 55.2, 66.9, 69.0, 70.9, 74.5, 113.3, 113.9, 129.5, 130.1, 142.2, 159.3.
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17 Attempts with serine ethyl ester afforded a higher yield for the amidation (80%) and comparable yields for the first oxazole synthesis; however, as the ethyl ester was less readily accessible, the methyl ester was used.
18
General Procedure for Oxazoline Synthesis: To a dry 100-mL flask under N2 was added a solution of the amide 10 (1.00 g, 3.39 mmol) in anhyd MeCN-CH2Cl2 (4:1, 15 mL), Ph3P (1.33 g, 5.08 mmol), and DIPEA (0.94 mL, 5.47 mmol). After the mixture was cooled in an ice-bath for 90 min, CCl4 (0.50 mL, 5.16 mmol) was added slowly. After 14 min, the mixture was allowed to warm to r.t. and stirred for 5.25 h. The mixture was cooled in an ice bath. EtOAc (30 mL) and sat. aq NaHCO3 (9 mL) were added, and after 10 min, the biphasic mixture was diluted with H2O (21 mL). The aqueous layer was extracted with EtOAc (3 × 15 mL); the combined organic layers were washed with brine (1 × 20 mL), dried over NaSO4, filtered, and concentrated to a yellow solid. Flash chromatography (25-50% EtOAc gradient in hexanes) yielded the water-sensitive oxazoline as a clear yellow oil (0.66 g, 70%). 1H NMR (300 MHz): δ = 1.98 (m, 2 H), 2.47 (m, 2 H), 3.54 (t, J = 6.1 Hz, 2 H), 3.46 (dd, J = 8.8, 10.6 Hz, 1 H), 3.79 (s, 3 H), 4.46-4.50 (m, 3 H), 4.66-4.69 (m, 1 H), 7.27-7.36 (m, 5 H).
19
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20b For best results we suggest purifying the amine 12 shortly before amide synthesis, as yields for the bisoxazole cyclization dropped by as much as 30% in other cases.
21 The reduction of the bisoxazole was a sensitive reaction; during a repetition on larger scale, yields dropped to 30% because of competitive decomposition.
22
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23 Spectral data for dithiane 3: 1H NMR (300 MHz): δ = 2.03-2.18 (m, 4 H), 2.94-3.00 (m, 6 H), 3.56 (t, J = 6.1 Hz, 2 H), 4.50 (s, 2 H), 5.18 (s, 1 H), 7.26-7.32 (m, 5 H), 7.74 (s, 1 H), 8.16 (s, 1 H). 13C NMR (100 MHz): δ = 24.9, 25.1, 26.8, 30.3, 41.4, 68.7, 72.8, 127.5, 127.5, 128.2, 130.0, 135.7, 138.1, 138.3, 140.5, 155.2, 165.7.
24 We tested the enantiomeric purity of aldehyde 17’s enantiomeric purity by reducing a sample to the alcohol and comparing its rotation to the alcohol produced by lithium borohydride reduction of ester 16. We observed only 1.5% racemization, which we judged acceptable. See: Roush WR.
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25c The lithium enolate was deprotonated with n-BuLi (1.01 equiv) in Et2O (0.125 M) at 0 °C to r.t.
26a
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26b The unusual Z selectivity is only maintained for the olefination reagent with methyl ester and methyl phosphonate.
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29a The β,γ-unsaturated aldehyde could survive at room temperature for over a day without appreciable decomposition. In contrast, the benzoate-protected analogue would decompose within hours, and it could only be synthesized in low yield (33-56%).
29b Spectral data for the (S)-β,γ-unsaturated aldehyde: [α]D
20 +135 (c = 0.54, CHCl3). 1H NMR (300 MHz): δ = 1.05 (d, J = 6.9 Hz, 3 H), 1.94 (d, J = 1.2 Hz, 3 H), 2.95-3.00 (m, 1 H), 3.58 (d, J = 10.6 Hz, 1 H), 3.68 (d, J = 10.6 Hz, 1 H), 5.07 (d, J = 9.5 Hz, 1 H), 7.21-7.48 (m, 15 H), 9.38 (d, J = 1.3 Hz, 1 H). 13C NMR (100 MHz): δ = 14.1, 22.3, 46.0, 62.7, 86.7, 123.8, 127.0, 127.7, 128.6, 137.8, 143.9, 201.2.
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31a Spectral data for diene 4: 1H NMR (300 MHz): δ = 0.99 (t, J = 5.1 Hz, 3 H), 1.61-1.68 (m, 3 H), 1.76-1.78 (m, 3 H), 3.08 (m, 1 H), 3.42-3.50 (m, 1 H), 3.96-4.18 (m, 2 H), 5.10-5.38 (m, 3 H).
31b Spectral data for ent-(S)-20: IR: 3022, 2947, 2855, 2307, 1112, 1085, 702 cm-1. 1H NMR (300 MHz): δ = 0.94 (d, J = 6.7 Hz, 3 H), 1.02 (s, 9 H), 1.89 (d, J = 1.1 Hz, 3 H), 2.40-2.50 (m, 1 H), 3.38 (dd, J = 1.7, 9.5 Hz, 2 H), 3.48 (d, J = 10.4 Hz, 1 H), 3.75 (d, J = 10.4 Hz, 1 H), 5.10 (d, J = 9.5 Hz, 1 H), 7.24-7.63 (m, 25 H). 13C NMR (100 MHz): δ = 17.5, 19.1, 22.0, 26.7, 34.9, 62.8, 68.5, 86.4, 126.7, 127.4, 127.6, 128.6, 129.3, 131.1, 133.0, 133.8, 133.8, 135.5, 135.5, 144.3.
32 A test reaction conducted with the aldehyde derived from ent-20 and tetraethylphosphonium bromide did favor the E-olefin (E/Z = 4.8:1), but in unacceptably low yield (9%).
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37 The model 26 was prepared from racemic N-benzoyl serine methyl ester by methods analogous to those used for the synthesis of oxazole 11 and dithiane 3.
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